barSeed - Barley Seed Development Database

Probe CUST_10013_PI390587928

Source Contig U35_36655

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10013_PI390587928	Hv_44K_v2	CCAGATTTGTACAAAGTCTCAGTAATTTCTATCGTATCATAAATTTACCTTGAGGGTGAC	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355741	2095	2e-24	1962 - 2021	100	60 / 60	plus	ABC04584 ABC04585 ABC04586
JLOC1	JLOC1_49243.1	2134	8e-25	1899 - 1958	100	60 / 60	plus
Harvest21	ABC04586	2148	3e-25	2060 - 2119	100	60 / 60	plus	ABC04586
Harvest21	ABC04584	628	3e-25	536 - 595	100	60 / 60	plus	ABC04584
Harvest35	U35_36655	559	3e-25	30 - 89	100	60 / 60	minus
Harvest35	U35_16056	1326	3e-25	1234 - 1293	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_36655 559 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAGAGAAATGTGTCACCCTCAAGGTAAATTTATGATACGATA
GAAATTACTGAGACTTTGTACAAATCTGGAGGCACCTTCCGTGCTTCTTTCCCCCCTCCC
CCGACAGAGGAAACCGGGCAGGCACGAGGCACACCCCCAACCCTGCTGCAAACTTCTTCA
GCTAGCCAACAGCACACGCATGAACGTATCAGATGTCCTCATCTCGGCATCTGCAGGGCT
CCCCGCCGGAGCCACGCTTCGTGATGCCAGAAGCTTTACAACATGCTTTACATACACTAC
AGGTAACTGAGACAAGTTGTTTTTTTTTTTTTTTTTTAACGTAGTCCACATATGAATCAA
AGGGGATAATCTTCGTGATACATTCGTATTGTCCCAGCAATCCTCTGAAAGCCTTTTATT
ACACACTCCAACCTCGAGCACCGTACAAGAGAAATAGCATATGTACGGTCGCCGACGAGC
TTCCCATCACCTAAGATCATCCCAAGGCATGTGAGCGCACACCAGATACATTACACTGGT
AGCCAGCGCAAGGATGGAT

Homology of Contig U35_36655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None