barSeed - Barley Seed Development Database

Probe ABC14014

Source Contig ABC14014

barSeed

Links

Affymetrix Source Sequence (1675 bp)

>ABC14014 1675
ACCGTCGCATGGAGGCGGACGGCGCCGCCGCCGCTGCGGCTACAAGGGGAAGGGAGGCGG
AGATCATAGAGGCCCTCCGCGCGCGCGTCCCCTTCTTCAAGAAGCAGGCAGACTCCTTGA
CCCTTGAAGGTGTGAGGAGAACATTGGAGAAGGACATGGATTTGAAGATAAATTCACTTG
ATCCTCATAAGAAGTTCATTAAGCAATGTGTTGACAAGGTGTTTTCTGGTTGTGACAATG
AGAGTACTGATAATGCATCAGAGAGGGCTGAAGCTAAAGTGGATAACTTATCAGAAGATG
CCCAACCAATGTTTGGCTCAAACACAATCTCCTCCAGTTCTGATGAGCAGGGGGCAAGGT
CCACTGAAACCAATAAAGACCCAGAGGGGGCGAAAAATCACAGTTCTGGTATTGATATCA
CCGAAGCTATGATAATGAAAGCTATTGACAAAAGGGCTTCCTATTTTAGAGAGAACTCAG
AAACTCTTACTCTACTAGGAGTTCGGCGGACTTTAGAAGAAGACCTCAAACTTGAGAAGA
AAGCTTTGGATGCTTTTAAGGGTTATATTACCAAAGAGTTAGATAGAGTTTTGCAAGAAC
CTGAAAATGGAATGGCGGATCATAGTAAACAGGAGGCTTGTAAGGATGCTGGTCAGAAAA
CAAGTAAAGGCTCTAAAAGAGCTCGTCAAGACTCTGATACCTTTGAACTAAATAATAGTC
ATAGTGAGAGGGAAGACAGTGATGAGGATATAAGGCCAAAAAAGAGGGGGCCTAAAAAAG
GCAAATCTATAAAGCAGCAGAAAAAAGTGACGGCAGGGAAAAAATTGTCAACTCTCAAGG
TTGAAAAGGTTGCAAAAAGAGACTTAGATAAAAGTGATAAAGATCAAGGTCGAAATTCTG
CAGAAGATAATCCCCTTTCATCTGCTGTGGATAATAAGAAGGCAGCTCCAGCCCATGGCA
AACGAGTAGAACGGCTTAAGTCAGTTATAAAATCTTGTGGAATGAGTGTGCCACCTTCTG
TGTATCGGAGGGCAAAGCAGGCCCCGGAGAGCAAGCGCGAGGCTTGTTTGATAAAGGAGT
TGGAGCATATACTTGAAAAGGAAGGATTGTCTTCACACCCTTCTGAGAAAGAAATTAAAG
CAGCAAGAAAAAGAAAGGAAAGAGCAAAGGATCTTGAGGGCATAGACATGAGCAATATTA
TTACGAGTTCTCGTAGGAGAAGTGCATCTAGTTTTATACCCCTGGCAGTGCCTAAAATTG
AAGCTGGTAGTGACAGCGATGATGATGATGATGGTGAAGACGAGAATGTGGAGGGTGGAG
ATAAAGGTGACGACGACGAAGCAGAAGCTGGAGATGGATCTGCTGATGATGCTGGAAACG
GGAGCAATTGACTCTGGCGTTACTACGATACAAGGTAGAAAGAACTAGTTCTGGCCTTGA
CTGGTTTGCTGTGGGCCGGGATGAAGCCAGTTATTCAGAAGTTACTTTCTGACATTTGAC
TTGTTCGGAGTATATTATTGGCTGGGCATGGCGTGTTATATCAGGCGTGTTATCTATTCA
GAATCGTGTGTTCATGTAGTTCGAAAGCTACAGCAACATTATGTTTGTTCGATATCTGAC
GTATGAAGAAGTCGTATCTTATCAATTTTCAGAAATCGTCATGTTGCCCAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248611.1	1714	0.0	46 - 1700	99	1654 / 1655	None	ABC14014
AK372256	3017	3e-160	28 - 334	100	307 / 307	None	ABC13844 ABC14014 ABC17852 ABC41122 ABC44969
MLOC_79889.1	1304	0.0	43 - 695	99	653 / 654	None	ABC14014
MLOC_79889.3	1237	0.0	3 - 652	100	650 / 650	None	ABC14014
MLOC_79889.2	999	3e-96	592 - 789	99	197 / 199	None	ABC14014
MLOC_79889.4	897	8e-97	549 - 747	99	198 / 200	None	ABC14014
MLOC_13264.2	1765	0.0	1362 - 1765	100	404 / 404	None	ABC14014
MLOC_13264.4	1639	0.0	1236 - 1639	100	404 / 404	None	ABC14014
MLOC_22080.1	374	0.0	4 - 372	100	369 / 369	None	ABC14014
MLOC_13263.1	847	0.0	497 - 847	100	351 / 351	None	ABC14014
MLOC_13264.3	1122	2e-122	803 - 1041	100	239 / 239	None	ABC14014
MLOC_13264.5	323	2e-122	4 - 242	100	239 / 239	None	ABC14014
MLOC_5032.2	881	9e-52	648 - 759	100	112 / 112	None	ABC14014
MLOC_5032.1	423	9e-52	203 - 314	100	112 / 112	None	ABC14014