barSeed - Barley Seed Development Database

Probe ABC12328

Source Contig ABC12328

barSeed

Links

Affymetrix Source Sequence (909 bp)

>ABC12328 909
CCCTCCCCGCCTCCTCCGTCCCAATCTTCGTGCCCCAAGGGCCGACCCCCGCCGGCCCGC
CCGCGTCCGTCTCCGTCGCCATCGCCTCCGACGGCTTCGGGCCCCCGCCCAACACGCTCA
CCGAGCCCGTCTGGGACACCGTCAAGCGCGACCTCGCCCGCATCGTCAGCAACCTAAAGC
TCGTCGTCTTCCCCAACCCCAACCGCGAGGACCCCGGCAAGGCGCTCAGGGACTGGGACC
TGTGGGGCCCCTTCTTCTTCATCGTCTTCCTCGGCCTCACACTGTCCTGGTCCGCCTCTG
TTAAGAAGTCTGAAGTATTTGCTGTCGCGTTCGCTGTGCTGGCAGCTGGGGCTATAATCT
TAACATTGAATGTTCTGCTTCTGGGTGGTCACATCATCTTCTTCCAAAGCCTCAGTCTCC
TTGGGTATTGTTTGTTTCCTCTGGATGTTGGAGCTCTAATTTGCTTGCTGAAGGACAATG
TCATACTAAAGATCATCGTCGTGACAGTCACACTGGCGTGGAGCTCCTGGGCTGCCTACC
CATTCATGAGCGCTGCTGTGAACCCAAGGAGAAAGGCTCTGGCCATATATCCTGTATTCC
TCATGTACATCTCGGTCGGGTTCCTCATAATTGCCATAGATTAGCCCCTGGCGTGAGGCA
ATGTAGTAACACCTGAAATGTTGAAATTTTCCCCGTTGTACCGTCGTAACGTATACAGGC
TTGAATATACTTTGTCCCTGGAGCCCTTATGGATTGTTTTGTCGAGAACCTGGCCTTCAC
ATGAGCAAGAGGCATAAGGCTGTAAAACTAGTCGAAAATTATATGCTGGTCTACTGTTGT
AAAGGGCATCTCGTGCTTTGGACCACTTAATTGACTATATATACCAAGCTTGCTAAAAAA
AAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354925	1059	0.0	315 - 1059	99	744 / 745	None	ABC12328
MLOC_25741.2	966	0.0	486 - 966	100	481 / 481	None	ABC12328
MLOC_25741.1	1816	0.0	1357 - 1816	100	460 / 460	None	ABC12328
MLOC_13452.1	1021	5e-161	404 - 981	84	488 / 578	None	ABC12328
AK368032	931	7e-160	315 - 623	99	308 / 309	None	ABC03605 ABC12328 ABC44620
MLOC_25741.3	306	2e-134	47 - 306	100	260 / 260	None	ABC12328
MLOC_32558.1	262	3e-118	8 - 259	97	245 / 252	None	ABC12328
MLOC_40268.1	210	2e-86	1 - 177	99	176 / 177	None	ABC12328
MLOC_32941.1	289	1e-63	1 - 148	97	143 / 148	None	ABC12328
MLOC_48337.1	129	1e-52	3 - 127	97	121 / 125	None	ABC12328