barSeed - Barley Seed Development Database

Probe ABC11779

Source Contig ABC11779

barSeed

Links

Affymetrix Source Sequence (2003 bp)

>ABC11779 2003
GTAGAGGCGCGCTTTGTTGTGGAGAAGAACAGCCTGATGGTCACGTCGCCGACGGCTCTG
CGGGGGCGGCACGATAGCGCCATAGGCAACTTCGGCATCCCGCAGTACGGAGGGAGCATG
GCTGGTGCCGTCGTTTATCCCATGGGCAACTCAGACGCCTGCAAGGCCTTCGACGGCGGC
AGGAAGGAGCACCTCTTCCGCACCAAGCCTGGAGCGCTCCCAAGCTTCCTTCTCATAGAC
CGTGGAAATTGCCTATTTGCTAAGAAGGTCTGGAATGCACAAGATGCTGGTGCCTCAGCA
GTACTTGTAGTTGATGACAAAGATGAGCCACTGATAACAATGGACTTACTTCAGGAAGAT
GACGAGGCTGCAAAATATATACAAAACATATCCATTCCTTCTGCTTTAATTGATAAAAAA
TTCGGAGAACAGTTGAAGAAGGCTGTTAAAGATGGTGAAATGGTAAATGTGAATCTTGAT
TGGAGGGAGGCTGTCCCACATCCTGATAACCGAGTTGAGTATGAGTTGTGGACAAATAGC
AATGATGAATGTGGGCCTAAATGTGATATGCTTATGCATTTTCTGAAGGAATTTAAGGGA
GCTGCACAGTTACTTGAAAAAGGTGGTTATAGTCAGTTCACACCCCATTATATTACTTGG
TATTGCCCTCAAGCATTTGTTGTCAGCAAACAATGCAAGTCCCAGTGTATAAATCATGGA
AGGTATTGTGCACCTGATCCAGAACAAGATTTTAGTACTGGCTATGATGGAAAAGATGTT
GTTGTAGAGAACTTGAGACAGCTTTGTGTGTTTAATGTTGCAAATGTGATAAAAAAACCA
TGGATCTGGTGGGATTATGTGACTGATTTTCACATAAGGTGCCCAATGAAGGACAAGAAG
TATAACAAAAAGTGCGCAGAAACAGTCATTAAATCACTAGGTTTGGAAGTGAAGAAGATT
GATAAGTGCATGGGAGATCCAAATGATGATTCTGACCACCCGTTGCTTAAAATGGAGCAG
GACTCTCAGATTGGGAAAGGGTCAAGAGGAGATGTTACCATATTGCCTACTCTTGTTGTA
AACAATCGACAATATCGAGGACAGTTAGGAAGGAAAGCTGTCCTCAAAGCTATTTGTGCT
GGCTTTGAGGAAACTACTGAGCCAAATGTTTGTCTGAGTGATGACATGGAAACAAACGAG
TGTCTGAGCGATAATGGAGGTTGTTGGCAAGACAAAGCTGCTAATGTAACAGCTTGTAGG
GACACTTTTCGCGGCAGAGTGTGTGAATGCCCCACATTCAATGGCGTGCAATTTAAAGGA
GATGGCTACAACAACTGTGAACCCGCTGGTCCAGGAAAATGCTTGATAAACCACGGTGGG
TGTTGGCATGAAACTCGCAACAGAAAAACATTCTCTGCTTGTCAGGAATCAGGAGAACGA
AATTGCAAGTGTCCAGCTGGTTTCCGAGGGGACGGTGTTAAAAAATGTCATGACATTGAC
GAGTGCAAGGAGAGAAAAGCTTGCCAGTGTCCTGAATGCAGCTGCAGAGATACATGGGGT
GGCTATGATTGTACTTGTAGTGGCGACCTTTTGTACATCAAGGAGCACGACACTTGCATA
AGTAAGACAGCAGTTAAGGCTAAAGAAGCATGGGCTGCCGTGTGTGGGATCTTGGTCGCC
TTGGTTATTGTGGCGGCAGGAGGCTATGTGGTGTACAAATACAGATTAAGGTCATACATG
GACTCTGAGATTAGAGCTATCATGGCACAGTACATGCCACTGGACAGTCAAGGAGAGGTC
CCAAATGATTCACACGAAGGTCATCCACTTGCTCACTAACTGAACCTGTACAACTAACAT
ATGTAGAAATGTGGTTTGAACAACGTTGAAATATACAGAATGCATACAAAGCTGAATGGC
AGCGTGATTTTATTCTGACATGAATGCGAGACTCACGTACAAATTTATCTAGAGCACTTT
CACCTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354596	3423	0.0	150 - 673	99	523 / 524	None	ABC11779 ABC13844 ABC17852 ABC41122 ABC44969
MLOC_63102.2	1099	0.0	1 - 1095	100	1095 / 1095	None	ABC11779
MLOC_63102.1	1217	0.0	14 - 1108	100	1095 / 1095	None	ABC11779
MLOC_63102.3	1174	0.0	1 - 1092	100	1092 / 1092	None	ABC11779
MLOC_71982.1	681	0.0	4 - 392	100	389 / 389	None	ABC11779
MLOC_77334.1	600	3e-132	141 - 397	100	257 / 257	None	ABC11779
MLOC_17280.1	726	3e-126	199 - 444	100	246 / 246	None	ABC11779
MLOC_17280.2	374	7e-113	1 - 222	100	222 / 222	None	ABC11779
MLOC_17280.3	338	2e-103	1 - 205	100	205 / 205	None	ABC11779
MLOC_17280.4	295	5e-95	1 - 190	100	190 / 190	None	ABC11779