Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u0246699.1--16315-148Containing




Transcripts from Gene HORVU1Hr1G035960

TranscriptLength(bp)Description
HORVU1Hr1G035960.14404gene=HORVU1Hr1G035960 CDS=250-2490
HORVU1Hr1G035960.24410gene=HORVU1Hr1G035960 CDS=250-2496
HORVU1Hr1G035960.33510gene=HORVU1Hr1G035960 CDS=227-1612
HORVU1Hr1G035960.44333gene=HORVU1Hr1G035960 CDS=963-2435
HORVU1Hr1G035960.53468gene=HORVU1Hr1G035960 CDS=101-1579
HORVU1Hr1G035960.64318gene=HORVU1Hr1G035960 CDS=975-2429
HORVU1Hr1G035960.73557gene=HORVU1Hr1G035960 CDS=390-1673
HORVU1Hr1G035960.83536gene=HORVU1Hr1G035960 CDS=285-1652
HORVU1Hr1G035960.94434gene=HORVU1Hr1G035960 CDS=1267-2550
HORVU1Hr1G035960.104488gene=HORVU1Hr1G035960 CDS=376-2604
HORVU1Hr1G035960.113631gene=HORVU1Hr1G035960 CDS=448-1749
HORVU1Hr1G035960.124376gene=HORVU1Hr1G035960 CDS=1211-2494
HORVU1Hr1G035960.134468gene=HORVU1Hr1G035960 CDS=1303-2586
HORVU1Hr1G035960.143527gene=HORVU1Hr1G035960 CDS=277-1662
HORVU1Hr1G035960.154452gene=HORVU1Hr1G035960 CDS=350-2587
HORVU1Hr1G035960.164243gene=HORVU1Hr1G035960 CDS=1115-2398
HORVU1Hr1G035960.173503gene=HORVU1Hr1G035960 CDS=298-1665
HORVU1Hr1G035960.183951gene=HORVU1Hr1G035960 CDS=428-2113
HORVU1Hr1G035960.194252gene=HORVU1Hr1G035960 CDS=3-2414
HORVU1Hr1G035960.204285gene=HORVU1Hr1G035960 CDS=1048-2466
HORVU1Hr1G035960.212732gene=HORVU1Hr1G035960 CDS=273-1556
HORVU1Hr1G035960.222149gene=HORVU1Hr1G035960 CDS=106-1011
HORVU1Hr1G035960.231137gene=HORVU1Hr1G035960 CDS=1-1137
HORVU1Hr1G035960.241517gene=HORVU1Hr1G035960 CDS=150-1517
HORVU1Hr1G035960.251481gene=HORVU1Hr1G035960 CDS=114-1481
HORVU1Hr1G035960.261649gene=HORVU1Hr1G035960 CDS=171-1649
HORVU1Hr1G035960.272151gene=HORVU1Hr1G035960 CDS=1-2151
HORVU1Hr1G035960.281241gene=HORVU1Hr1G035960 CDS=277-1170
HORVU1Hr1G035960.291147gene=HORVU1Hr1G035960 CDS=245-1138
HORVU1Hr1G035960.301605gene=HORVU1Hr1G035960 CDS=324-1292



Exon Structure of HORVU1Hr1G035960


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g30156.1 +1 0.0 1049 516/681 (76%) protein|starch synthase, putative, expressed
TAIR PP10 AT3G01180 @ ARAPORT
AT3G01180.1 @ TAIR
+1 0.0 810 368/492 (75%) Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792
BRACH PP3 Bradi3g27260.1.p +1 0.0 1186 624/749 (83%) pacid=32819703 transcript=Bradi3g27260.1 locus=Bradi3g27260 ID=Bradi3g27260.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons