Morex Pseudomolecules and MLOC locations

The CDS of the predicted MLOC transcripts were mapped onto the Morex pseudomolecules with GMAP. Matches were filtered requiring at least 98% identity and 50% alignment length with the pseudomolecule, and the best match for each MLOC was stored. At present 75,300 MLOC transcripts have a given location on the pseudomolecules (including chrUn).

Using the forms below, you can check a list of MLOC transcript Ids for locations on the pseudomolecules, find other MLOCs surrounding a given MLOC transcript or between two MLOC transcripts as well as extract genomic sequence from these regions of the pseudomolecules.

Pseudomolecule	Pseudomolecule length (Mbp)	# MLOC transcripts located on pseudomolecule
1H	558.5	9058
2H	768.1	10999
3H	699.7	11570
4H	647.1	8895
5H	670.0	11740
6H	583.4	8832
7H	657.2	11739
chrUn	249.8	2466

Retrieve table of MLOC transcript pseudomolecule locations

List of MLOC transcript IDs (separated by whitespace please):

Retrieve genomic sequence and other MLOCs around a given MLOC transcript

MLOC transcript you are interested in:

Range around the MLOC: +/-   kbp of adjacent sequence

Retrieve genomic sequence and other MLOCs between two given MLOC transcripts

Between MLOC transcripts:

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