The CDS of the predicted MLOC transcripts were mapped onto the Morex pseudomolecules with GMAP. Matches were filtered requiring at least 98% identity and 50% alignment length with the pseudomolecule, and the best match for each MLOC was stored. At present 75,300 MLOC transcripts have a given location on the pseudomolecules (including chrUn).
Using the forms below, you can check a list of MLOC transcript Ids for locations on the pseudomolecules, find other MLOCs surrounding a given MLOC transcript or between two MLOC transcripts as well as extract genomic sequence from these regions of the pseudomolecules.
Pseudomolecule | Pseudomolecule length (Mbp) | # MLOC transcripts located on pseudomolecule |
---|---|---|
1H | 558.5 | 9058 |
2H | 768.1 | 10999 |
3H | 699.7 | 11570 |
4H | 647.1 | 8895 |
5H | 670.0 | 11740 |
6H | 583.4 | 8832 |
7H | 657.2 | 11739 |
chrUn | 249.8 | 2466 |