- Gene HORVU7Hr1G069070
- Gene IDHORVU7Hr1G069070
- Location chr7H: 367194699 - 367199111
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u53291 | 96.7 | + | + | 4413 | -151 | Containing |
Transcripts from Gene HORVU7Hr1G069070
Transcript | Length(bp) | Description |
---|---|---|
HORVU7Hr1G069070.1 | 2417 | gene=HORVU7Hr1G069070 CDS=375-2039 |
HORVU7Hr1G069070.2 | 2525 | gene=HORVU7Hr1G069070 CDS=375-2147 |
HORVU7Hr1G069070.3 | 2575 | gene=HORVU7Hr1G069070 CDS=781-2217 |
HORVU7Hr1G069070.4 | 2572 | gene=HORVU7Hr1G069070 CDS=781-2214 |
HORVU7Hr1G069070.5 | 2512 | gene=HORVU7Hr1G069070 CDS=701-2134 |
HORVU7Hr1G069070.6 | 2471 | gene=HORVU7Hr1G069070 CDS=339-2108 |
HORVU7Hr1G069070.7 | 2293 | gene=HORVU7Hr1G069070 CDS=331-1935 |
HORVU7Hr1G069070.8 | 2356 | gene=HORVU7Hr1G069070 CDS=331-1998 |
HORVU7Hr1G069070.9 | 2607 | gene=HORVU7Hr1G069070 CDS=326-1555 |
HORVU7Hr1G069070.10 | 1235 | gene=HORVU7Hr1G069070 CDS=284-1234 |
HORVU7Hr1G069070.11 | 2511 | gene=HORVU7Hr1G069070 CDS=616-2136 |
HORVU7Hr1G069070.12 | 1775 | gene=HORVU7Hr1G069070 CDS=3-1775 |
HORVU7Hr1G069070.13 | 1744 | gene=HORVU7Hr1G069070 CDS=350-1744 |
HORVU7Hr1G069070.14 | 1537 | gene=HORVU7Hr1G069070 CDS=134-1537 |
HORVU7Hr1G069070.15 | 1141 | gene=HORVU7Hr1G069070 CDS=3-1139 |
HORVU7Hr1G069070.16 | 1630 | gene=HORVU7Hr1G069070 CDS=2-1255 |
Exon Structure of HORVU7Hr1G069070
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g12760.2 | +2 | 0.0 | 605 | 297/384 (77%) | protein|YT521-B, putative, expressed |
TAIR PP10 | AT3G13060 @ ARAPORT AT3G13060.2 @ TAIR |
+1 | 3e-55 | 202 | 94/160 (59%) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634 |
BRACH PP3 | Bradi3g18190.1.p | +2 | 0.0 | 692 | 335/402 (83%) | pacid=32821513 transcript=Bradi3g18190.1 locus=Bradi3g18190 ID=Bradi3g18190.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons