- Gene HORVU4Hr1G027260
- Gene IDHORVU4Hr1G027260
- Location chr4H: 166877530 - 166885401
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u27957 | 88.9 | - | - | 7872 | -987 | Containing |
Transcripts from Gene HORVU4Hr1G027260
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU4Hr1G027260.1 | 4676 | gene=HORVU4Hr1G027260 CDS=2972-4255 |
| HORVU4Hr1G027260.2 | 1345 | gene=HORVU4Hr1G027260 CDS=80-1081 |
| HORVU4Hr1G027260.3 | 1450 | gene=HORVU4Hr1G027260 CDS=85-1320 |
| HORVU4Hr1G027260.4 | 1418 | gene=HORVU4Hr1G027260 CDS=77-1135 |
| HORVU4Hr1G027260.5 | 1460 | gene=HORVU4Hr1G027260 CDS=80-1186 |
| HORVU4Hr1G027260.6 | 1733 | gene=HORVU4Hr1G027260 CDS=91-1374 |
| HORVU4Hr1G027260.7 | 1812 | gene=HORVU4Hr1G027260 CDS=86-1369 |
| HORVU4Hr1G027260.8 | 6317 | gene=HORVU4Hr1G027260 CDS=4921-6315 |
| HORVU4Hr1G027260.9 | 6367 | gene=HORVU4Hr1G027260 CDS=2310-3593 |
| HORVU4Hr1G027260.10 | 1154 | gene=HORVU4Hr1G027260 CDS=407-853 |
| HORVU4Hr1G027260.11 | 1098 | gene=HORVU4Hr1G027260 CDS=185-955 |
| HORVU4Hr1G027260.12 | 1403 | gene=HORVU4Hr1G027260 CDS=3-1403 |
| HORVU4Hr1G027260.13 | 3985 | gene=HORVU4Hr1G027260 CDS=2370-3653 |
| HORVU4Hr1G027260.14 | 1833 | gene=HORVU4Hr1G027260 CDS=473-1654 |
| HORVU4Hr1G027260.15 | 1210 | gene=HORVU4Hr1G027260 CDS=236-1045 |
| HORVU4Hr1G027260.16 | 1513 | gene=HORVU4Hr1G027260 CDS=236-1348 |
| HORVU4Hr1G027260.17 | 1315 | gene=HORVU4Hr1G027260 CDS=1-1308 |
| HORVU4Hr1G027260.18 | 1405 | gene=HORVU4Hr1G027260 CDS=121-1302 |
| HORVU4Hr1G027260.19 | 1598 | gene=HORVU4Hr1G027260 CDS=224-1504 |
| HORVU4Hr1G027260.20 | 1281 | gene=HORVU4Hr1G027260 CDS=1-1281 |
Exon Structure of HORVU4Hr1G027260
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +1 | 0.0 | 786 | 375/418 (90%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.3 @ TAIR |
+3 | 0.0 | 699 | 339/435 (78%) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441 |
| BRACH PP3 | Bradi4g09125.1.p | +1 | 0.0 | 837 | 398/430 (93%) | pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons