Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU0Hr1G021100	77.2	-	-	2131	-343	Partial-Overlap

Transcripts from Gene BART1_0-u59110

Transcript	Length(bp)	Description
BART1_0-u59110.001	2216	2216 bp MSTRG.59110.1 MSTRG.59110
BART1_0-u59110.002	2202	2202 bp MSTRG.59110.2 MSTRG.59110
BART1_0-u59110.003	2219	2219 bp MSTRG.59110.3 MSTRG.59110
BART1_0-u59110.004	2060	2060 bp MSTRG.59110.4 MSTRG.59110

Exon Structure of BART1_0-u59110

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g06140.1	+2	4e-125	391	286/565 (51%)	protein|no apical meristem protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi3g16480.1.p	+2	9e-151	459	323/630 (51%)	pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0016021	integral component of membrane
GO:0006355	regulation of transcription, DNA-templated

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons