- Gene BART1_0-u30923
- Gene IDBART1_0-u30923
- Location chr4H: 594109089 - 594119514
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU4Hr1G074360 | 99.3 | - | - | 10357 | 2285 | Partial-Overlap |
Transcripts from Gene BART1_0-u30923
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u30923.001 | 5418 | 5418 bp MSTRG.30923.1 MSTRG.30923 |
BART1_0-u30923.002 | 5415 | 5415 bp MSTRG.30923.2 MSTRG.30923 |
BART1_0-u30923.003 | 5099 | 5099 bp MSTRG.30923.3 MSTRG.30923 |
BART1_0-u30923.004 | 5282 | 5282 bp MSTRG.30923.4 MSTRG.30923 |
BART1_0-u30923.005 | 5268 | 5268 bp MSTRG.30923.5 MSTRG.30923 |
BART1_0-u30923.006 | 4275 | 4275 bp MSTRG.30923.6 MSTRG.30923 |
BART1_0-u30923.007 | 4243 | 4243 bp MSTRG.30923.7 MSTRG.30923 |
BART1_0-u30923.008 | 4977 | 4977 bp MSTRG.30923.8 MSTRG.30923 |
BART1_0-u30923.009 | 4977 | 4977 bp MSTRG.30923.9 MSTRG.30923 |
BART1_0-u30923.010 | 2996 | 2996 bp MSTRG.30923.10 MSTRG.30923 |
BART1_0-u30923.011 | 6277 | 6277 bp MSTRG.30923.11 MSTRG.30923 |
BART1_0-u30923.012 | 5320 | 5320 bp MSTRG.30923.12 MSTRG.30923 |
BART1_0-u30923.013 | 2600 | 2600 bp MSTRG.30923.13 MSTRG.30923 |
Exon Structure of BART1_0-u30923
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g06950.1 | +3 | 0.0 | 950 | 660/1219 (54%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+3 | 1e-116 | 409 | 282/802 (35%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
BRACH PP3 | Bradi1g74000.4.p | +3 | 0.0 | 1333 | 823/1165 (71%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0016579 | protein deubiquitination |
GO:0003676 | nucleic acid binding |
GO:0005975 | carbohydrate metabolic process |
GO:0016021 | integral component of membrane |
GO:0030246 | carbohydrate binding |
GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO:0004565 | beta-galactosidase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons