- Gene BART1_0-u30899
- Gene IDBART1_0-u30899
- Location chr4H: 593061716 - 593070622
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU4Hr1G074120 | 97.8 | + | + | 8714 | -193 | Containing |
Transcripts from Gene BART1_0-u30899
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u30899.001 | 3928 | 3928 bp MSTRG.30899.1 MSTRG.30899 |
BART1_0-u30899.002 | 3932 | 3932 bp MSTRG.30899.2 MSTRG.30899 |
BART1_0-u30899.003 | 3655 | 3655 bp MSTRG.30899.3 MSTRG.30899 |
BART1_0-u30899.004 | 3199 | 3199 bp MSTRG.30899.4 MSTRG.30899 |
BART1_0-u30899.005 | 3342 | 3342 bp MSTRG.30899.5 MSTRG.30899 |
BART1_0-u30899.006 | 3988 | 3988 bp MSTRG.30899.6 MSTRG.30899 |
BART1_0-u30899.007 | 404 | 404 bp MSTRG.30899.7 MSTRG.30899 |
BART1_0-u30899.008 | 3202 | 3202 bp MSTRG.30899.8 MSTRG.30899 |
BART1_0-u30899.009 | 4723 | 4723 bp MSTRG.30899.9 MSTRG.30899 |
BART1_0-u30899.010 | 3291 | 3291 bp MSTRG.30899.10 MSTRG.30899 |
BART1_0-u30899.011 | 3129 | 3129 bp MSTRG.30899.11 MSTRG.30899 |
BART1_0-u30899.012 | 3764 | 3764 bp MSTRG.30899.12 MSTRG.30899 |
BART1_0-u30899.013 | 3514 | 3514 bp MSTRG.30899.13 MSTRG.30899 |
BART1_0-u30899.014 | 904 | 904 bp MSTRG.30899.14 MSTRG.30899 |
BART1_0-u30899.015 | 3690 | 3690 bp MSTRG.30899.15 MSTRG.30899 |
BART1_0-u30899.016 | 3916 | 3916 bp MSTRG.30899.16 MSTRG.30899 |
BART1_0-u30899.017 | 3754 | 3754 bp MSTRG.30899.17 MSTRG.30899 |
BART1_0-u30899.018 | 3412 | 3412 bp MSTRG.30899.18 MSTRG.30899 |
BART1_0-u30899.019 | 3535 | 3535 bp MSTRG.30899.19 MSTRG.30899 |
BART1_0-u30899.020 | 3479 | 3479 bp MSTRG.30899.20 MSTRG.30899 |
Exon Structure of BART1_0-u30899
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os11g38900.1 | +3 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+3 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
BRACH PP3 | Bradi1g53840.1.p | +3 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0008270 | zinc ion binding |
GO:0034968 | histone lysine methylation |
GO:0018024 | histone-lysine N-methyltransferase activity |
GO:0016021 | integral component of membrane |
GO:0005694 | chromosome |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons