- Gene BART1_0-u25305
- Gene IDBART1_0-u25305
- Location chr3H: 679659657 - 679668962
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU3Hr1G109960 | 100.0 | + | + | 9304 | 119739 | Partial-Overlap |
Transcripts from Gene BART1_0-u25305
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u25305.001 | 2584 | 2584 bp MSTRG.25305.1 MSTRG.25305 |
BART1_0-u25305.002 | 1935 | 1935 bp MSTRG.25305.2 MSTRG.25305 |
Exon Structure of BART1_0-u25305
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 1188 | 580/684 (85%) | protein|expressed protein |
TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+1 | 0.0 | 858 | 428/673 (64%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
BRACH PP3 | Bradi2g58697.2.p | +1 | 0.0 | 1289 | 617/655 (94%) | pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1 |
GO Annotation
There is no GO annotation for this geneBarley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons