Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU2Hr1G102860	87.5	+	+	2947	-423	Containing

Transcripts from Gene BART1_0-u14701

Transcript	Length(bp)	Description
BART1_0-u14701.001	1563	1563 bp MSTRG.14701.1 MSTRG.14701
BART1_0-u14701.002	1553	1553 bp MSTRG.14701.2 MSTRG.14701
BART1_0-u14701.003	1050	1050 bp MSTRG.14701.3 MSTRG.14701

Exon Structure of BART1_0-u14701

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os04g50864.1	+2	8e-94	283	138/159 (87%)	protein|expressed protein
TAIR PP10	AT1G68310 @ ARAPORT AT1G68310.2 @ TAIR	+2	1e-71	225	111/153 (73%)	Symbols: AE7 | Protein of unknown function (DUF59) | chr1:25599812-25601239 FORWARD LENGTH=157
BRACH PP3	Bradi1g72250.4.p	+2	1e-96	290	141/159 (89%)	pacid=32792585 transcript=Bradi1g72250.4 locus=Bradi1g72250 ID=Bradi1g72250.4.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0106035	protein maturation by [4Fe-4S] cluster transfer

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons