Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G078110	91.2	-	-	2380	-230	Containing

Transcripts from Gene BART1_0-u05387

Transcript	Length(bp)	Description
BART1_0-u05387.001	1720	1720 bp MSTRG.5387.1 MSTRG.5387
BART1_0-u05387.002	1487	1487 bp MSTRG.5387.2 MSTRG.5387

Exon Structure of BART1_0-u05387

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g43582.1	+2	2e-118	352	167/195 (86%)	protein|tRNA methyltran, putative, expressed
TAIR PP10	AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR	+2	3e-83	261	122/197 (62%)	Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274
BRACH PP3	Bradi2g20250.1.p	+2	3e-135	394	202/220 (92%)	pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0009507	chloroplast
GO:0016021	integral component of membrane
GO:0008168	methyltransferase activity
GO:0032259	methylation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons