- Transcript HORVU7Hr1G106780.14
- Transcript IDHORVU7Hr1G106780.14
- Gene IDHORVU7Hr1G106780
Exon Structure of HORVU7Hr1G106780.14
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 620785633 | 620785568 | + |
chr7H | 2 | 620786382 | 620785866 | + |
chr7H | 3 | 620786624 | 620786494 | + |
chr7H | 4 | 620787133 | 620786727 | + |
chr7H | 5 | 620787641 | 620787261 | + |
chr7H | 6 | 620788394 | 620787840 | + |
chr7H | 7 | 620788805 | 620788653 | + |
chr7H | 8 | 620789364 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g46240.1 | +1 | 0.0 | 961 | 539/859 (63%) | protein|BTB/POZ domain containing protein, putative, expressed |
TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+1 | 3e-70 | 249 | 145/362 (40%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
BRACH PP3 | Bradi1g32690.2.p | +1 | 0.0 | 726 | 374/483 (77%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2655 bp)
>HORVU7Hr1G106780.14 2655 150831_barley_pseudomolecules CGTTGTAATAAGCCACTACTAAGACAAAGCCTTTGTTGCGTTTCTCAGTTTTTTAAAAAG AGTTCCGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAAC GTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAAT TCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCA CACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTA GTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCA GTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTAT CTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATAC CATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAA ACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGA GCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACG TCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCT TCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATC GATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTG GTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAA GTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTG TGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTC TGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAA GGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGCTTGCTGGCCACAGATGTT ATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCA GTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTT TCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAA TCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTC ATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAAT CCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACG AGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTG AGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCT CCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTG GAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGG TGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGAT GAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTG AAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAA CCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAA GAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCT GTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGT CACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACC ATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGAC GTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCG GGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAG CGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAG GGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCC GCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCC GGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGG CTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGA GGCAGGCAGAGGTGA