- Transcript HORVU7Hr1G096640.12
- Transcript IDHORVU7Hr1G096640.12
- Gene IDHORVU7Hr1G096640
Exon Structure of HORVU7Hr1G096640.12
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 588696483 | 588696329 | + |
chr7H | 2 | 588697448 | 588696577 | + |
chr7H | 3 | 588699998 | 588698062 | + |
chr7H | 4 | 588700459 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g28460.1 | +3 | 2e-172 | 525 | 322/688 (47%) | protein|NBS-LRR disease resistance protein, putative, expressed |
TAIR PP10 | AT3G50950 @ ARAPORT AT3G50950.1 @ TAIR |
+3 | 5e-45 | 144 | 157/521 (30%) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852 |
BRACH PP3 | Bradi3g34697.5.p | +3 | 0.0 | 975 | 497/646 (77%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3304 bp)
>HORVU7Hr1G096640.12 3304 150831_barley_pseudomolecules CAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAGCTCCTCGTCT CCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTTCTCTTGAGGT TCATGGCAAGGATCAAGGTAGTACACAGAGACAGACTGCAGTCCGATTAGCATCTCGTGC AAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGGCTTC CGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGGGGCC ATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTCCAAC GGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGCAACA TCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGAGTTG TCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATCTGGT GCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGAGGCG GCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGGCGCC GAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGTGGGC GTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATTGGAT CTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCGTCGC GTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCGGAGA CCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGCCCAA AGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGATAAA AGGTACTGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCA AGGGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATG AGGTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCA GTGCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCC CATCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGG CAATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAG TGTACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGA TTTTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCA GTGTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCG AGGGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTA ACGAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGG AAAGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACA ATTTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTC GATTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGT CACTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGC ATATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTG GTCTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAA TAGCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGA TTCCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTA TATTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCA ACACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAA GCACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGG TCAATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATG AGGGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAAC TCGTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACC TCCAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAA GCCTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGC GGCTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAG AAGAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTG AGCTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCA TCAAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTC GTCCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGT TGATATGGACGAAATGAACATTTGGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTA GAATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGG AGCAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATT CAGTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGA AATGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCT TTTTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAA GTAC