- Transcript HORVU7Hr1G071060.25
- Transcript IDHORVU7Hr1G071060.25
- Gene IDHORVU7Hr1G071060
Exon Structure of HORVU7Hr1G071060.25
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 387995344 | 387994896 | - |
chr7H | 2 | 387996154 | 387996027 | - |
chr7H | 3 | 387996306 | 387996230 | - |
chr7H | 4 | 387996488 | 387996426 | - |
chr7H | 5 | 387996673 | 387996577 | - |
chr7H | 6 | 387997091 | 387996751 | - |
chr7H | 7 | 387997326 | 387997189 | - |
chr7H | 8 | 387997558 | 387997429 | - |
chr7H | 9 | 387998007 | 387997921 | - |
chr7H | 10 | 387998194 | 387998096 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06050.1 | +3 | 7e-165 | 326 | 151/168 (90%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+3 | 4e-118 | 268 | 119/167 (71%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
BRACH PP3 | Bradi3g16580.1.p | +3 | 1e-178 | 329 | 152/168 (90%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1609 bp)
>HORVU7Hr1G071060.25 1609 150831_barley_pseudomolecules GCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGTTCCCGCAGCGTCGCTCTTCGGTGCGGAC TGCCGCCTCTGCTCAGCCGACGTGCTCTCGCCCCCCGAGGTTCGGGCAAGGATCGAGGTG GCGGTGCTCAATTTCCTCGCCTTGCTTTCGTCTCCCTCTTCTCCGTCCATCTCCGTCCTC CCCCTGATTTCCCGCAAGTCCACCAACTGCAGCCTGCGCAGCGGCTTGCTGAGTGATGTT TCATCGGTGTATCTGTCCTACGCCTTCTGCAAGAGGTCGCTAATGAGAGAAAATGATGCC AAGGCATTCGTCAGAGTATGGAAAGTCATGGAGATGTGCTACAAGATCTTGGGCGAAGGG AAGCTTGTCACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACTCACCCAAGTACTTC AGCTGTCAGCGTCATGTGAATCAAACCATCCAAGATGTTGTTTCATTGCTCCGTTGCACA AGGCAGAGTTTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGTTG CATGTGTGTGTATGCTGAAAAGTGGTTTGCCTGATACAAATATGTGCTGTCTGTTAAGGG AATCAATACAACTCTTGTTTGCCTCCTCATGAAACTGCAACAGCCTCAACTTTGTGTTCA TCTTAGGAACCAGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATGCC ATTACTGGGGATCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATCTC ATTCTAGTGGAGAAGAGGATGCCATATTTCAGAGGCTGGCTGAAGACCGCTTATATAATC AGCTTCCATGTATCCTGATCACTGCAAAAGGATATCCTGATATCGCAACGAGGTTTATCT TGCATCGACTGAGCCAGACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGGAACC CTGCAGGGCTCTCTATACTGTGTACTTACAAATATGGAAGCATATCAATGGGCTTGGAAT CATACAGATACGCTTGCAATGTAAAATGGCTTGGCCTAAGAGGAGATGATCTGCAGCTTA TCCCTCAGAGTTCATTCCAAGAGTTGAAACCTCGTGATTTGCAGGTCGCCAAAAGCTTGC TGTCATCTAAGTTTCTTCAGGACACGCACAGAGCGGAGTTGACACGGATGGTCGAGACGG GCACGCGTGCTGAGATCGAAGCTCTCTATTGCCATGGTTTTGATTTCCTGGGGAAGTTCA TCGCCAGGAAGATTGTGCAGGGTGATTACATTTGACAGTGTTTTTTCTCTCTGGCTGTAT GGCTCATGATGACGAGGCTACTGGTACAGTAGTGTGAGTGTCTCTGTTAATTGGAGAGCG ATATCGCCCATGGCTCATTATGGCTGGTGAGGTCTGAACTTTGACATGCATAGAACAAAA CGGATAGTAAAAGTTCTCCCTCTGAGAGTGGAACGATAGCAAGTAAGCACGGTTGTACTC CAGTATATTCGTTTAGGCGGTCAGGGTAATTCAGTTTCTGGTGTATGCGTATGCCTTCTG CGCTCCCTGACAGTACTCTCCCCATAAAATTGGCAATCCAAATGTTGCA