- Transcript HORVU7Hr1G070780.2
- Transcript IDHORVU7Hr1G070780.2
- Gene IDHORVU7Hr1G070780
Exon Structure of HORVU7Hr1G070780.2
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 385320482 | 385319874 | - |
chr7H | 2 | 385320686 | 385320596 | - |
chr7H | 3 | 385322058 | 385320936 | - |
chr7H | 4 | 385322493 | 385322164 | - |
chr7H | 5 | 385323086 | 385322800 | - |
chr7H | 6 | 385324057 | 385323651 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06140.1 | +2 | 0.0 | 504 | 254/351 (72%) | protein|no apical meristem protein, putative, expressed |
TAIR PP10 | AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR |
+2 | 2e-66 | 235 | 117/215 (54%) | Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648 |
BRACH PP3 | Bradi3g16480.1.p | +2 | 0.0 | 545 | 274/355 (77%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2847 bp)
>HORVU7Hr1G070780.2 2847 150831_barley_pseudomolecules GGGGTATATACAGAGCAAATTCCGGACACGGTAAAGGAAGTCACGCGGCACTCGCTTTCT TCTCCCACACGTCTCCTCCCCGCGTCCTCCCCCTAAAAATCCCCAAATCCGACCAAACCC TAGGCAAAATCCACTCCCCTCCGCTTCCTTCGCTGCTAAGTATATCCCCTGGGCTCCGAA TCTCCTACCGGGTTGGGTCTTGTAGTCGTTGGATGAGAGCTTGGGACAGTGGAGGAGGAT GACGGTGATGGAGCTCAAGGCGCTACCGCTCGGTTTCCGGTTCCACCCCACCGACGAGGA GCTCGTCAGGCACTACCTCAAGGGGAAGATCACGGGGCAGATCAAGAACGAGGTCGAGGT GATCCCGGAGATCGACGTCTGCAAGTGCGAGCCGTGGGACCTCCCAGATAAAGCTTTGAT CCGCTCGGAGGATCCAGAGTGGTTCTTCTTTGCACCCAAGGACCGCAAATATCCCAATGG AAGCAGGTCAAACAGGGCGACGGAGGCCGGGTACTGGAAGGCTACCGGGAAGGACAGGGT CATCAAGTCCAAGGGCGAGAAGAAAAAGCAGCATATGATTGGCATGAAGAAGACCCTTGT GTTCCACCGAGGACGTGCTCCAAAAGGGGAGCGCACTGGTTGGATTATGCACGAGTACCG CACCACCGAGCCAGAGTTTGAGTCTGGCGAGCAGGGTGGCTATGTTCTGTACCGCCTATT TCAAAAGCAAGTGGAGAAAACTGAGCGCTCCATTCCGGAGGAAATGGATAGAAGTGGCTA CTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGGAAGCTATCAC ACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTGAGTTGCCATG TACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAAATGGCAATCC CGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCGATGAAAGTCC CAAGCAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCACAGACGAAAAA TCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATGACCATTTGGA CAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATGAAACAATTGC TGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAGACAATGGGAT TATGCAGGTAATATTTATTTTTTGCATCTGCTGTATATGTTACGATTATTGTCTGCCTTC TTATATATGTTTGTTCTCTGTAGGCTCAGGGTGATTTGCTATATGATGATCCAAACTGGT TTGGTAATTTTCTGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCAC CATTGCTTCCTTATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCT TGCAAGATTTGTTCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACG GATTTGGATTTAATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATAT TTTCTCAACAGGGCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCA ATGTTGAGAGTAGAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTG TAACTTCGAAATATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGT CAACCGGGGTTACTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACC GCGATGATGCTGAATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAA ATGCGCCTTCCGATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCA CTGCTCCAAGTTCAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAA GGTTGCGGCTACAATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAA GTTGCATTATAGAACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAGCATG TGGATACAAACTTCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAGCATA TGTACATGCCTGATCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAA GCGACAAGGAGAACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGA GGGGAGGCTTCGCAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTG TTAGCGTTGGGGTCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGTGTCA CATTTTCCCCACATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTTTAGA CGGTTGTAAGACAGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGC AAATGAGAAGCGGGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTGGTAC ATGCTAGTTTTCGTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATCCATT ATGCGTGTTGTTGTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCCTTTT TCCCATTTTGTGGAACTTTGCAGTCGCTTCATTTTTAGTGATGCAGTTGCTTCATTTTTA GTGATTCATCTCCCAATTTTAAGCGGG