- Transcript HORVU7Hr1G041090.7
- Transcript IDHORVU7Hr1G041090.7
- Gene IDHORVU7Hr1G041090
Exon Structure of HORVU7Hr1G041090.7
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 112660066 | 112659896 | + |
chr7H | 2 | 112660225 | 112660166 | + |
chr7H | 3 | 112660580 | 112660502 | + |
chr7H | 4 | 112661070 | 112660982 | + |
chr7H | 5 | 112661592 | 112661380 | + |
chr7H | 6 | 112662272 | 112662138 | + |
chr7H | 7 | 112662527 | 112662396 | + |
chr7H | 8 | 112662915 | 112662700 | + |
chr7H | 9 | 112665447 | 112665323 | + |
chr7H | 10 | 112665926 | 112665866 | + |
chr7H | 11 | 112666454 | 112666039 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g14040.1 | +1 | 0.0 | 623 | 329/353 (93%) | protein|ThiF family domain containing protein, putative, expressed |
TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.1 @ TAIR |
+1 | 1e-175 | 504 | 271/351 (77%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457 |
BRACH PP3 | Bradi1g44307.5.p | +1 | 0.0 | 672 | 361/389 (93%) | pacid=32793960 transcript=Bradi1g44307.5 locus=Bradi1g44307 ID=Bradi1g44307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1697 bp)
>HORVU7Hr1G041090.7 1697 150831_barley_pseudomolecules CAAGACTTTCCTCTACCTTCTGATCGGCCGAGCAGGGGTTAGGGTTCTAGGCGGCTGCGC CGGAGACATGGAGGAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTCGCGGGCGCTGG CGCCGTAGTAGGCGGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCCAGGGCGAAGCG GAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGTGGGCAGTACTG GACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTCTCTGATGAAGTTGTCGCTGAGC AGCTTACAAGTCATTGGTCTTGGAGGAGTTGGCAGTCATGCTGCTTCCATGCTCCTCAGA TCTGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAGGTCTCACTCTCATCACTAAAT CGGCATGCTGTGGCAACCAGAGAGGACGTGGGGACCCCAAAAGCATCATGCCTCAAGAAG CATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCAAGAGTGCAGTTGTATGATTCA TCAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTTGTTCTTGATTGCATAGATAAC ATTGATACTAAGGTGTCTCTCCTTGCGGCTTGCGTACGCAGAGGGTTAAGGGTACTTTCT GCAATGGGGGCTGGAGCTCGAGCTGACCCGACCCGAATCCGTGTTGCGGATTTGAGAGAA TCAAGCAATGATCCCCTTTCTCGGGCGGTACGGCATCGGCTGAAGAAGGATCATGGAATT GAAGGTGGAATACCAGTAGTTTTTTCAATGGAGAAGCCCAAGGCAAAGCTACTTCCCTTT CAAGGTTCGAAAGAAGAGGAAACTCCATCAGATTACCAGATTGTGCCAGGATTCAGGGTT CGCATTATCCCAGTACTGGGAACTATCCCTGCAATATTTGGTCAAGTTATGGCCTCCTAT GTGGTTACTCAGCTTGCCCAGTTTGATTTTCAAACTGAACCAATTGTTAACCTGGATTTG GATCATTACCGCGTTCTTCACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCA GCCGAGCAAGTTTTGGTTGATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGT GGCCGCAGTGCTAGGGACCAAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTC AACGAACTGATGCTTGTTCGTAGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTA ATACTTCTCAAGTTCAGTGAGGCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAA GATGAAGAACCTGAATTCTACGCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAG TTTGCTTTATGAGCTGGTCACCGATGTTACTGGATTTCTACGATTGCTATACCGTCATAA GCCGTGCAATGCTACTGGACTAGTCAGGTAGGTTTCAGTTTTGCATGGTCTGATCTTGTG TGATAGTGACGAGGAGCAAGTAGATGATGCACACTTCCCTGAATTTTTGTTTTGGCCATA GAACTAGGACTTGTTGGTGATGCTTTGATTTCTCTGGAAGGATCCTCCTGTAATCGTCTC CCCGGGATTTTTTATGCGTTTGAGATTGTCTCATGTAAACCAAATCAGAGATTATATTGA GCATACGATATGCGGCA