- Transcript HORVU7Hr1G041090.17
- Transcript IDHORVU7Hr1G041090.17
- Gene IDHORVU7Hr1G041090
Exon Structure of HORVU7Hr1G041090.17
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 112660066 | 112659945 | + |
chr7H | 2 | 112660236 | 112660166 | + |
chr7H | 3 | 112660580 | 112660502 | + |
chr7H | 4 | 112661070 | 112660923 | + |
chr7H | 5 | 112661739 | 112661380 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g14040.1 | +1 | 3e-72 | 229 | 148/175 (85%) | protein|ThiF family domain containing protein, putative, expressed |
TAIR PP10 | AT5G37530 @ ARAPORT AT5G37530.2 @ TAIR |
+1 | 7e-56 | 186 | 114/135 (84%) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456 |
BRACH PP3 | Bradi1g44307.6.p | +1 | 4e-78 | 244 | 175/209 (84%) | pacid=32793958 transcript=Bradi1g44307.6 locus=Bradi1g44307 ID=Bradi1g44307.6.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (780 bp)
>HORVU7Hr1G041090.17 780 150831_barley_pseudomolecules GGCGGCTGCGCCGGAGACATGGAGGAGAGGGCGAGGCAGCTGCTCCTCCTCGCCGCCGTC GCGGGCGCTGGCGCCGTAGTAGGCGGGCTCTCCGTTGCTTCCGTCTTCAGCTTCCTCTCC AGGGCGAAGCGGAGAGAGGGATACGTGCGCAAGCTGTTGGAATCCAATGGCGGTGCTGGT GGTACGCACGCTGGCAGTACTGGACCGGGAGCACGTCTGCATGCTAGCTCGGATCTTCTC TCTGATGAAGTTGTCGCTGAGCAGCTTACAAGGAATATACAATTTTTTGGAGTCCAATCT CAGAAGAAAGTTACTGAATCTTTTGTTGTAGTCATTGGTCTTGGAGGAGTTGGCAGTCAT GCTGCTTCCATGCTCCTCAGATCTGGGGTTGGCAGGTTGCTCCTAGTAGATTTTGATCAG GTCTCACTCTCATCACTAAATCGGCATGCTGTGGCAACCAGAGAGGACGTGGGGACCCCA AAAGCATCATGCCTCAAGAAGCATTTCTCATTGATATATCCAGAGTGTCAAATAGAAGCA AGAGTGCAGTTGTATGATTCATCAGCTGAGGACGAAATTCTTTCTGGACAGCCAGATTTT GTTCTTGATTGCATAGATAACATTGATACTAAGGTAAACAAATATTGCTTAACTAATTCT GATACCAAATCTGATGTTGATTTTTTTGTTAGATAGTTGGCTTTCAGCATTCCACACATT TTGCGGTTTTCTTCAGTATTCAGGTGTATGTTTTATTTTTCATGTTGATATGCTCTAAAT