- Transcript HORVU6Hr1G021340.1
- Transcript IDHORVU6Hr1G021340.1
- Gene IDHORVU6Hr1G021340
Exon Structure of HORVU6Hr1G021340.1
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 64215270 | 64214424 | - |
chr6H | 2 | 64215658 | 64215404 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi3g03747.3.p | +1 | 1e-86 | 277 | 155/243 (64%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1102 bp)
>HORVU6Hr1G021340.1 1102 150831_barley_pseudomolecules TGCTGTCTGCAGGCTGAAGGAAATAGCCGTGTTGCTGGCCCCAGCAAAAGATCGAGACGG AGTGCAGGGAAATCTGGAAGTTCAGGCAAGGTTGATTCAGTGGACAATTCATATCTTCTT CCCGCGTCTGAAATCATCAGTGTACCTACACATCCACAAGGGATTCCTGAGAGGAAGCCC GAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGATAAAGGAGCTCCCTTGTGCCTG ACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAGCCTGTCTTGAACACACACCCT ACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGAGCTGTCTCTCAGGAGGACACA GGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCCTATCCCACCATCAACACAAGC GACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAGGACGACCCTTTCCTGGACGTG ATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTCGCTTCTCACGAGGACGTGAGG CGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAGAACGTGTGCGGACTCGAGCAT AGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCAGCAGCACCAGGCGGCGCTGGA ACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTCGTGCCAACCGCCGAGCTGAAG GACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGATGCGACGCTCCGTTTGCGTGT TGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTGTAGAGAAGGAGAAGAGAAAGA AAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGGGCCTCAACCGTGGTCGTTACT GTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTATACAAGGGCAGTTGTTACTGG TTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAAATGTTTGGTTTGGAACCATGT CGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTTTTCCCATTTTACTAAAAAAAA TCAGTTTTACCTGCAAGTGAAA