- Transcript HORVU6Hr1G011910.20
- Transcript IDHORVU6Hr1G011910.20
- Gene IDHORVU6Hr1G011910
Exon Structure of HORVU6Hr1G011910.20
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 22229650 | 22229475 | + |
chr6H | 2 | 22229842 | 22229786 | + |
chr6H | 3 | 22231287 | 22231195 | + |
chr6H | 4 | 22231497 | 22231402 | + |
chr6H | 5 | 22232507 | 22232423 | + |
chr6H | 6 | 22233100 | 22233048 | + |
chr6H | 7 | 22233288 | 22233205 | + |
chr6H | 8 | 22233498 | 22233388 | + |
chr6H | 9 | 22233586 | 22233558 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g03050.1 | +3 | 1e-120 | 343 | 165/199 (83%) | protein|dimethyladenosine transferase, putative, expressed |
TAIR PP10 | AT1G01860 @ ARAPORT AT1G01860.1 @ TAIR |
+3 | 3e-88 | 265 | 155/255 (61%) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343 |
BRACH PP3 | Bradi3g02232.4.p | +3 | 1e-138 | 395 | 232/260 (89%) | pacid=32819652 transcript=Bradi3g02232.4 locus=Bradi3g02232 ID=Bradi3g02232.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (784 bp)
>HORVU6Hr1G011910.20 784 150831_barley_pseudomolecules GTTGGGCTGCGCTCACTGTGCTGCAGAACTACATGCTGAACGCGAGGGTGAACGAGGAGC TGGTGGCGGCGGCGGGGGTAGAGGTAGGGGACGTCGTGCTCGAGATAGGACCCGGGACGG GCTCGCTCACCGCCGCTCTGCTCGCCGCCGGCGCCACCGTCGTCGCCGTCGAGAAGGATA AGCATATGGCTACACTTGTGAGAGATAGGTTTGGATCCACAGAGCAATTGAAGGTCATTG AAGAAGATATTACAAAATTTCACGTTCACTCCCATTTTCTCCCTATCCTGGACGAGAAAT CCCGTGGCACGAAAAAATATGCCAAGGTTGTAGCAAACTTACCATTCAATGTCAGCACTG AAGTTGTCAAACAAATTCTCCCAATGGGAGATGTTTTCTCTGTCATGGTGCTCATGCTTC AGGATGAAGCAGCGCTACGCCTTGCAAATGCTTCAATACAAACACCAGAGTACCGACCTA TCAATGTGTTTGTGAATTTCTACTCTGAACCCGAATACAAGTTCAAGGTAGAGAGGGCCA ACTTTTTCCCTCAACCGACGGTTGACGGTGGTGTTATAAGGTTTAAAATAAAGGATGCTG GGGAGTATCCGCCTGTTAGTTCTAACAAAAGTTTTTTTTCAATGGTGAACTCCGCGTTCA ATGGGAAGCGCAAGATGCTTCGGAAATCACTTCAACACCTATATTCTTCTGTTGAAATCG AGGCCGCTCTTACCAATATCGGTCTTCCGCCTACAGCTAGACCGTCGGAACTGATGATGG ATGA