- Transcript HORVU6Hr1G000280.2
- Transcript IDHORVU6Hr1G000280.2
- Gene IDHORVU6Hr1G000280
Exon Structure of HORVU6Hr1G000280.2
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 707435 | 707303 | + |
chr6H | 2 | 708353 | 708300 | + |
chr6H | 3 | 709652 | 708511 | + |
chr6H | 4 | 710469 | 710377 | + |
chr6H | 5 | 711827 | 710916 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g04700.1 | +3 | 2e-64 | 221 | 154/375 (41%) | protein|OsFBX361 - F-box domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi3g00580.1.p | +3 | 5e-89 | 286 | 173/382 (45%) | pacid=32819138 transcript=Bradi3g00580.1 locus=Bradi3g00580 ID=Bradi3g00580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2334 bp)
>HORVU6Hr1G000280.2 2334 150831_barley_pseudomolecules CTCGGCTCTCCCCTCACTCCTCAGTCCCCACTCTACACTCCTCTCAGGAGCTCGCGGATG GACAGAAAGGAGGAGCGGCGCCGCCGGCGACCTCCCCTCACCCCGCCGCCCCGTCCCCGT CGGTCCGGTCGAGCAGTGGAGAGAGAGGAGGGCTGATGGGTCCTGCTGAGGTTCCCCAAA TCCAATGGGCCGGCCCCATTCCCAGCTCGCCGCGCGTGTACGGCAGGAAGCTGTGGCGCT CCGTGTCCAAGGTGCTCGGCAACGACAATCTCCTTGCCGAGATCCTCGTCCGTCTCTCTT CGAAGCCGTCCTCGCTCCCCCGCGCGTCCGCCGTGTGCAAGCGCTGGCGCAACATCCTCT CCGACCCCGAGTTCCTCAAACGCTTCCGCAAGCACCACCGGAAGCCTCCTCTGCTCGGCT TCTTTGAAGGTTATGCTAACCGCTTCACCCCTGTCATGGACTCGCCCGACCGTATCACTG CTGCCTGCTTCTCCATGCCCAAGAGAAACACACCCTACAACGACCATAGAGAATACATGG GCTGCCGCCATGGCCTTGCTGTCCTGGTCAACAAGCAAGAGCGCAAGACCTTCGTGTGGG ACCCTCTCACTGGCCGACAGCACAGCGTGGCTTTTCCACCCGGGCTCGATGACGCCTTTA CAGGGAATTTCTGTATGTGGCGCGGCGCGGTGTTGTGTGCTGATGCTGAAGATGGGCATG TGCACGGAGATTGCTTCTCGAGTCCGTTTAAATTGGTCTTGGTCTGCTGCGGTGGATACA ATACACAGGCATTTTGCTCTGTCTATGACTCGGTATCTGGTGTTTGGGGAGGTGTTTTCT CGACCGCGATATCAAGTATAATTTCTATGTTAAGGCCCAGCATCCTAGTTGGTAATACAA TTTGCTGGTTGATTTCTGGAGGTGATATCCTTGTGTTTGACTTCGAATGTCAGAGCCTTC ATGTGATCGAGAAGCCGGCATACTACTATGTTACCGACGGGTGTTTTCAGCTCTTACGGA TGGAGGGTGGTGGACTTGGCCTTGCTGTTTTGTTGGGCCTGACCATCCAATTGTGGGAGA GGAAATCTAACTGTGATGGCGTCGTCGGGTGGGTGTTGCTGCAGAAAACCATTCCGCTGG AGGGGATGTTTCCAAAAATGGATTCTGTACGTTTCGTCGGGTATGATGAGGACACAAATG TGATTGTTCTCACTTCAATGACTGGCAACTTCACACTCCAGCTTGACTCGATGCAGATCA AACATATTGTTAAAAGAAACAACATATGTTACGACCCGTTTTATCCCTACACCAATTTCT ATACTACAGCTAGGCAAGGCAACTTGGCGGGAAGGGATGGATCTGGAACTAATTGTGATC GGACCAGATCTGCTAACGTGCTACCTTGGTCGAATAATTTAGGTATTGAGAGTTAAATTC GGGTTGCTGAGACGCAGCCATGGCTAGTTGGCGCAGGGAAGTTCTTCTATTCTGCTGAGA TGCAGACATGGCTAGTTGGTGCAGTGAAGTTCTTCTTCTATTTTGTATGGTGTGGTCGAC GCTTAAAATGTCCTGCTATGTAGCCTGTTGGATCCTCTACTATGTATGCTGTGGCAGATG CGGTGGTCGATGCTGAGACGTCTCCTCTATGTTGTAGGGTCGTGGTCCGTGAATTGAATT TATCGGGTTTAATCATCCGAACTCTTATATATTTGTGTGCCTAGTGACTTGTCGAGTTGG TTCGGTTAATGCTTTGCTCTGTGATGCGAGGTACTAGCAAGGTGGATGGACAAGAAGCAG TGGGCTCTGGCACTTTACAGAGTTTCTTTGTGAAGTCCCTAACCGCGAGTCTTGCTAGTG ATCTAACTGTGATAGTGCTGGTCACATCACCACTTGCAGCAGAGGCAGACAATGCTTGTA TGTGCCCGGTTTTACTGCCCAGTTTAGCTTTAGTAATTTCAAAAGTATCCCCTTCTTGAA GCATATACACTTTCATATTCCGGTGTCTGGATATTTGCTGCTGATAACTTGTCATGTTTA TTTTAGCTTCAGTTGGATTTCCGGATTGCAATGCTGGCTCTTTCTTGGAGGAGACAAGTT AAAAAATGTTGTCGGTTTTGGTTTCAACTTCAAAGAGTGTTGTGACTTGGCTCTTAATCA GAAGAGTTGTGAGATTTTATTTGAACTTTGTTTGACTGGATAGAATTACTGATTTTTCCT TAATTGCTTGTCCTATTCTGGGTCTGTCATAGAGAATTTTCTTGTCCTGAGTTACATTGA AGATATTTTCCAGATCTTGGACTTGCCATTCCCGATACTTGTCCAATAAGTCAG