- Transcript HORVU5Hr1G051890.9
- Transcript IDHORVU5Hr1G051890.9
- Gene IDHORVU5Hr1G051890
Exon Structure of HORVU5Hr1G051890.9
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr5H | 1 | 405761523 | 405761346 | + |
chr5H | 2 | 405762633 | 405762486 | + |
chr5H | 3 | 405762807 | 405762730 | + |
chr5H | 4 | 405763442 | 405763358 | + |
chr5H | 5 | 405763594 | 405763535 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g21250.2 | +1 | 3e-99 | 285 | 165/179 (92%) | protein|clathrin adaptor complex small chain domain containing protein, expressed |
TAIR PP10 | AT4G08520 @ ARAPORT AT4G08520.1 @ TAIR |
+1 | 6e-77 | 228 | 128/177 (72%) | Symbols: | SNARE-like superfamily protein | chr4:5417887-5420295 FORWARD LENGTH=181 |
BRACH PP3 | Bradi4g08770.4.p | +1 | 6e-104 | 296 | 172/179 (96%) | pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (549 bp)
>HORVU5Hr1G051890.9 549 150831_barley_pseudomolecules CCCGTTACCGTTACACAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCT GAGGGAAAGCGCGTTGCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGG TTGACCTTTGAAAAGTCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCT GAGATAACATTGCTTGATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTC TTCGTCACTGCCGGAGATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTT GCTGATTCGGTTGGTCTTCTACTCAGGGGTGACGTTGAGAAGAGGACTGCACTTGAGAAC TTGGACTTGATACTTCTCTGCATTGATGAGATTATTGATGGCGGCATAATTCTTGAAACA GATGCGAATACCATTGCGGGGAAGGTTGCAACCAATGCTGCTGACGGTTCTGTTCCCTTC TCTGAGCAGACAATATCCCAAGCTCTGGCCACAGCCAGGGAACACTTTGCAAGATCTCTT CTGAAGTGA