- Transcript HORVU4Hr1G057650.6
- Transcript IDHORVU4Hr1G057650.6
- Gene IDHORVU4Hr1G057650
Exon Structure of HORVU4Hr1G057650.6
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 483706263 | 483705904 | + |
chr4H | 2 | 483706465 | 483706392 | + |
chr4H | 3 | 483706600 | 483706540 | + |
chr4H | 4 | 483706780 | 483706679 | + |
chr4H | 5 | 483707382 | 483707226 | + |
chr4H | 6 | 483711606 | 483711561 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g27320.3 | +1 | 1e-72 | 226 | 161/196 (82%) | protein|steroid binding protein, putative, expressed |
TAIR PP10 | AT5G58220 @ ARAPORT AT5G58220.3 @ TAIR |
+1 | 6e-43 | 148 | 95/190 (50%) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=311 |
BRACH PP3 | Bradi1g60700.3.p | +1 | 2e-85 | 258 | 163/194 (84%) | pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (800 bp)
>HORVU4Hr1G057650.6 800 150831_barley_pseudomolecules TTCACCTTCGTCTTACCCTTCCGGCAAAAACAGGTGTTGCTCTCGTAGCGCTCGCTCTCA CCCACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGTCTCTCCCCCCCTTCCGAT CTGAGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCCGACGACGGCCGTCGCGGG TGGCACCAGTGCAGTGGAGCAAATCAACCAGTTGAGATGGCGACATTGAGGCCGCTGAGC GTGGAGGAGGTGCTGAGGGTGAACGGCAGCCACCGCTTTGCCGCCGCGCTGGCTGCCGCC TCCCCCTTTGATTCTCTTGCCAACGCGCTCCTTGCCGCCCGCCGCATCTGGCTGAACGAG GTGGACGTGACTGGATGGCTGGAGGCCTTCGCTGCCCACCCACCCATCGGAAGCACCTCC TCCTCCGTCTCCAACAGGTGGAGCAAGGAAGAGCAATCAGCTGCTCTTTCCACAGCCACT GATTCGACTGCGCAGGAGTTGTCCGAGTGGAATGCCAAATACAGGGAGAAGTTTGGGTTC GTGTTCATGATATGCGCATCTGGGAGGACTGCCCCTGAGGTCTTAGCTGAGCTTAAGAGG CGTTATGCAAATAGACCAGTTGTTGAGCTTGAGGCTGCGGCAGAGGAAGAACTGAAGATA ACTGAGCTGCGTCTTGCAAAGCTTTTCGCATCAGAAACTGCTGCTCCCCCTACTTCAGGT GAAAATCAGATTAGCCAACCGGATAAAGCAGCAGGCAACTCCAACCGGACACGCCCTCCT ATCACAACCCATGTGCTGGA