- Transcript HORVU4Hr1G052720.22
- Transcript IDHORVU4Hr1G052720.22
- Gene IDHORVU4Hr1G052720
Exon Structure of HORVU4Hr1G052720.22
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 437923835 | 437923736 | + |
chr4H | 2 | 437924043 | 437923928 | + |
chr4H | 3 | 437924264 | 437924178 | + |
chr4H | 4 | 437924432 | 437924344 | + |
chr4H | 5 | 437924733 | 437924685 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g19970.1 | +1 | 3e-92 | 278 | 135/168 (80%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
TAIR PP10 | AT1G29890 @ ARAPORT AT1G29890.1 @ TAIR |
+1 | 3e-82 | 249 | 117/168 (70%) | Symbols: | O-acetyltransferase family protein | chr1:10464491-10467153 FORWARD LENGTH=470 |
BRACH PP3 | Bradi1g64180.3.p | +1 | 8e-96 | 285 | 140/168 (83%) | pacid=32801053 transcript=Bradi1g64180.3 locus=Bradi1g64180 ID=Bradi1g64180.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (441 bp)
>HORVU4Hr1G052720.22 441 150831_barley_pseudomolecules ATTGCTATAAAATTTGTTGGGTGCTTCTTGGTAGTTATCTTGGTATGGGAAATCCCAGGT GTCTTTGAGATAGTCTGGAGCCCATTCACTTTTCTTCTAGGTTATGATGATCCTTCTAAA CCAGATCTCCCTAGGTTGCATGAGTGGCACTTCCGATCTGGACTGGATCGCTACATATGG ATTGTGGGGATGATATATGCCTATTACCATCCAACAGTTGAGAAGTGGATGGAAAAGCTT GAAGAAGCTGAAACAAGAACGAAGCTCTATATTAAGGCCTCTATAGTTACAGTTTCTATA ACGGCTGGGTATTTGTGGTACGAGTACATCTACAAGATGGACAAGATTACCTACAATAAA TACCATCCTTACACATCCTGGATCCCCATAACCTGGCTTGGAAAGATTACACTAGAAACA TATATATCTCAGTTCCATATC