- Transcript HORVU4Hr1G050700.3
- Transcript IDHORVU4Hr1G050700.3
- Gene IDHORVU4Hr1G050700
Barley RTD
Exon Structure of HORVU4Hr1G050700.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 413785241 | 413784732 | - |
| chr4H | 2 | 413788922 | 413785954 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g56330.1 | +2 | 0.0 | 1454 | 742/855 (87%) | protein|TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed |
| TAIR PP10 | AT3G51550 @ ARAPORT AT3G51550.1 @ TAIR |
+2 | 0.0 | 1088 | 567/874 (65%) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895 |
| BRACH PP3 | Bradi1g63320.1.p | +2 | 0.0 | 1536 | 787/855 (92%) | pacid=32800622 transcript=Bradi1g63320.1 locus=Bradi1g63320 ID=Bradi1g63320.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3479 bp)
>HORVU4Hr1G050700.3 3479 150831_barley_pseudomolecules GGCAGAGCAAGCGCAGCGGCAGCACAGCAGTCGTAGAGAGAGCCGAGCGGAGTAGGTCGC CGTTGCCGTTGCTGGCAACCCCACTTTAATGCCGCGCCCGTAGTCCCGAAACCTCTCTCC CCTTCCTTTCTTCCCTGACGCCACCTCGGCCACCACTTTCCCCTCAAATCTCACCTCCTC CGCCACGCGCTGCCCGCCGCTTCTCTCGCCAGCACGCAAATCCGCCCCCAGATCGGCGCC GGGAGAGCCGTTTCATGGGCGATCTGTGAGCCGCGACGAAACGCAAGCTACTGCCATGAG AGGGCCCCCGAGATGCGCGCTCCTGCTCCTCCTGGCCGCCGCGGCGCTTGTCCCCGCAGC GCGGGCGCAGGGGGCGGCCGCGCCCGCGCCCTCGGCGGGGGCCGCGTTCGTTCCGCGGGA CGACATCCTGCTCGACTGCGGCGCCACGGGGAAGGGGAACGACACGGACGGCCGCCAGTG GGACGGCGACGCGGGGTCCAAGTACGCGCCTCCAAACCTCGCCTCGGCCAGCGCCGGGGC GCAGGACCCCTCGGTGCCGCAGGTGCCCTACCTCACCGCGCGGGTGTCGGCGGCGCCCTT CACCTACTCCTTCCCGCTCGGCCCCGGCCGCAAGTTCCTCAGGCTGCACTTCTACCCGGC AAACTACTCCAACCGCGACGCCGCCGACGCCTTCTTCTCCGTCTCCGTCCCGGCCGCCAA GGTCACGCTCCTCTCCAACTTCAGCGCCTACCAGACCATAACGGCGCTCAACTTCGCCTA CCTCGTGCGCGAGTTCTCCGTCAACGTCACCGGCCAGAACCTCGACCTCACCTTCACTCC GGAGAAGGGCCGCCCCAACGCCTACGCCTTCGTCAACGGCATCGAGGTCGTCTCCTCCCC TGACCTCTTTGACCTCGCCACGCCGCTCTTCGTCACCGGTGACGGCAACAACCAGCCATT CCCGATGGATCCTGCTGCTGCTCTGCAGACCATGTATCGGCTCAACGTCGGAGGCCAGGC CATCTCCCCTTCCAAGGACTCCGGCGGGGCTCGCTCATGGGACGACGACACGCCTTACAT TTACGGTGCAGGGGCAGGGGTATCGTACCAGAACGATCCCAATGTCACAATCACCTATCC TGACAATGTGCCGGGATATGTGGCACCTTCGGATGTCTATGCCACGGCGCGATCAATGGG GCCAGACAAGGGTGTAAACTTGGCCTACAATCTCACCTGGATATTGCAGGTGGATGCTGG GTACCAATACCTTGTGAGGCTCCATTTCTGTGAGATACAATCCCCATTTACTAAACCCAA CCAGCGGGTCTTCAGCATCTACCTCAACAACCAGACTGCCATGAAAGGTGCTGATGTGAT CCTGTGGGCGGATCCCAATGGTATTGGTACTCCAGTGTATAAGGACTATGTGGTGAGCAC TGTGGGTTCTGGGACTATGGATTTCTGGGTGGCTTTACATCCGGATGTAGAGACGAAGCC GCAGTACTATGATGCTATTCTCAATGGGATGGAGGTGTTCAAGCTGCAACTTACTAATGG GAGCCTCGTGGGGCTCAATCCTCTCCCAAGTCCTGATCCACCAGTGAATAGCGGGTCAGG AAACAAGAAATCAATAGTCGTGCCGATTGTTGGTGGAGTAGTCGGAGGTTTGGCAGTGCT TGCGCTTGGATATTGCTGCTTCATCTGCAAGCGTCGGAGGAAAGCGGCCAAGGCTAGCGG CATGAGTGATGGCCATTCTGGTTGGCTCCCATTGTCGCTGTATGGCCATTCACACACTTC AAGCTCAGCCAAGTCGCATGCTACAGGCAGTTATGCTTCATCTTTGCCATCCAACCTGTG CCGCCACTTCTCATTTGCGGAGATCAAGGCCGCAACAAAAAACTTTGATGAGTCACGAAT CCTTGGTGTTGGTGGGTTCGGTAAAGTTTACCATGGAGAAATTGACGGGGGCACAACTAA GGTGGCTATCAAGCGTGGCAATCCCTTGTCTGAGCAGGGCATACATGAGTTCCAGACTGA AATTGAAATGTTGTCAAAGCTCCGGCACCGTCATCTTGTGTCGCTGATTGGTTACTGCGA GGAGAAGAATGAGATGATCCTGGTCTATGACTACATGGCTCATGGAACCCTGCGTGAGCA CCTATACAAGACCCAGAATGCACCGCTTAGCTGGAGGCAGCGTTTGGAGATCTGCATCGG TGCTGCTCGTGGGCTTCACTACCTTCATACCGGTGCAAAGCACACCATTATCCACCGTGA TGTGAAGACGACAAACATCCTCCTGGATGAGAAATGGGTTGCCAAGGTTTCAGATTTTGG TCTGTCCAAGACTGGGCCATCGATGGATCACACACATGTGAGCACAGTTGTCAAGGGCAG TTTTGGTTACCTTGATCCTGAATATTTCCGCAGGCAGCAGCTCACTGAGAAATCTGATGT CTATTCCTTTGGTGTGGTGCTGTTCGAGGTCCTTTGTGCTCGGCCTGCCTTGAACCCCAC TCTTGCAAAGGAAGAAGTTAGCTTGGCAGAGTGGGCATTGCACTGCCAAAAGAAGGGAAT TCTTGATCAGATTGTTGATCCCTACCTCAAAGGAAAGATTGTTCCGCAGTGCTTCAAGAA GTTTGCCGAGACGGCTGAGAAGTGTGTTGCCGACAATGGCATTGAGCGCCCTTCGATGGG AGATGTGCTTTGGAACTTGGAGTTTGCTCTTCAGATGCAGGAAAGCGCGGAGGAGAGCGG AAGCATTGGCTGTGGGATGTCAGATGAGGGCACTCCCCTCGTGATGGTTGGAAAGAAGGA TCCCAATGACCCATCAATTGATTCAAGCACCACGACGACCACAACAACTTCCTTAAGCAT GGGTGACCAAAGTGTCGCGAGCATCGACTCGGATGGGCTGACGCCAAGCGCGGTGTTCTC ACAGATCATGAACCCCAAGGGGCGGTGAGAAAGAGTGGAATCGAATAAATCTAGCTCCCA GCTGTTCCGCCGAGAGAATTAGCTTCCGGTGTCCAGTCTGTTGAGTGGAGGAATGAAGAT TCGACAGATGGGTGGAGAGATCATCGTGAAATCGCCCAGTGGGTGGATGGACGACGTTTC GGGAAGCATTGATCATGATGCCGCCCAACCCTAAATCTTGTGCCTGTTCTGATGCGTCTT TGCTGGCCTTGTATATGTCCGTTTGCTTTCTTGCCAAACTTCTATTCCTTTTCTTGAATC ATGTAAGGAGGGTTTTTCTGAGAGCCACAAACAGCTGTAGGGAGCACAAGTTGTGTTGCA AACCACGAGACGTGTCACCCGGTATCTCTTCATGTATATGCTAGCAATATTCTGATTACC AACTTCTGAAGTTCTGGTACCTGCTATCAGCTCGATCTCATCTTTCTTGCAAAGAGGCAG GTCGGCACGGGCCTCATCGACGTGCCATTATGCAATACTACGTCTGATTTTGGTACCAG