- Transcript HORVU4Hr1G005710.39
- Transcript IDHORVU4Hr1G005710.39
- Gene IDHORVU4Hr1G005710
Exon Structure of HORVU4Hr1G005710.39
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 13553293 | 13553274 | - |
chr4H | 2 | 13554330 | 13554251 | - |
chr4H | 3 | 13554582 | 13554412 | - |
chr4H | 4 | 13555708 | 13555595 | - |
chr4H | 5 | 13556062 | 13555928 | - |
chr4H | 6 | 13556270 | 13556187 | - |
chr4H | 7 | 13557838 | 13557579 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g42350.1 | +3 | 8e-76 | 237 | 136/272 (50%) | protein|ankyrin, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g23634.1.p | +3 | 1e-77 | 241 | 136/250 (54%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (864 bp)
>HORVU4Hr1G005710.39 864 150831_barley_pseudomolecules ATTTTATGGGTTTCAGCTCTAGCCTACCCCAACTTGTTTGGGACTAAATGCTTTGTTGTT GTTGTTGTATTGCCAGAAAACACCTCTCCTCTTTGTTATAAGTTCCATGTTTTCTCCCAG GTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTG CTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTT TATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTG CTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAA TTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATT GAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGG TTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGA GTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGC AGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGG GATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGC CAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAA GTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCAT TACGGGAAGCTATGAAGTCCTTGA