- Transcript HORVU3Hr1G110480.1
- Transcript IDHORVU3Hr1G110480.1
- Gene IDHORVU3Hr1G110480
Exon Structure of HORVU3Hr1G110480.1
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 681733477 | 681733080 | - |
chr3H | 2 | 681734115 | 681733967 | - |
chr3H | 3 | 681734573 | 681734396 | - |
chr3H | 4 | 681735055 | 681734894 | - |
chr3H | 5 | 681735390 | 681735231 | - |
chr3H | 6 | 681735974 | 681735866 | - |
chr3H | 7 | 681736144 | 681736050 | - |
chr3H | 8 | 681736609 | 681736477 | - |
chr3H | 9 | 681737010 | 681736938 | - |
chr3H | 10 | 681737704 | 681737606 | - |
chr3H | 11 | 681737948 | 681737800 | - |
chr3H | 12 | 681738721 | 681738306 | - |
chr3H | 13 | 681738879 | 681738807 | - |
chr3H | 14 | 681739133 | 681738961 | - |
chr3H | 15 | 681739865 | 681739754 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g72880.1 | +3 | 0.0 | 801 | 435/522 (83%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+3 | 0.0 | 571 | 319/524 (61%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
BRACH PP3 | Bradi2g61370.4.p | +3 | 0.0 | 876 | 468/522 (90%) | pacid=32771968 transcript=Bradi2g61370.4 locus=Bradi2g61370 ID=Bradi2g61370.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2479 bp)
>HORVU3Hr1G110480.1 2479 150831_barley_pseudomolecules GAAGGAACTCGTCGAGAACAGCATCGACGCCGGCTCCTCCACCATCTCCGTCACCGTCAA GGACGGGGGCCTCAAGCTCATCCAGGTCTCGGACGACGGCCACGGCATCCGGTGTGAGGA CTTGCCAATATTGTGTGAGAGGCATACTACCTCAAAGTTGTCTGCATATGAGGATCTACA GACAATAAAGTCCATGGGGTTCAGAGGGGAGGCTTTGGCCAGTATGACTTATGTTGGCCA TGTTACCGTGACAACAATAACAGAAGGCCAACTGCATGGCTACAGAGTTTCTTATAGGGA TGGAGTAATGGAGAATGACCCAAAGCCCTGTGCTGCGGTTAAAGGAACTCAAATCATGGT TGAAAATTTATTCTACAATATGGTAGCTCGTAGGAAAACACTGCAGAACTCCAATGATGA CTATCCAAAGATAGTGGACTTCATCAGTCGGTTTGCAGTCCATCACATCAATGTGAACTT CTCTTGCAGAAAGGTAAATGTAGCTGTTTTCTGTGAACTCGTGAGTTTTGAGAAGGTGAC ATTTGCCTCCTCCTCTGTCACAGCATGGAGCCAATAGAGCAGATGTTCACAGTGGGAGCA CATCTTCAAGGCTAGATGCTATCAGGAATGTCTATGGGGCTTCGGTTGTTCGTGATCTGA TGGAAATACAGGTTTCAGATGAGAATGCTGTAGATGAAATATTCAAGATGGATGGTTTCA TCTCAAATGCAAATTATGTGGCAAAGAAGACTACTATGATTCTTTTCATAAATGATCGAC TTGTAGATTGCACTTCTTTGAAAAGAGCTACTGAATTTGTGTACTCTGCAATACTGCCTC AAGCATCGAAACCCTTCATATACATGTCCATCAATCTTCCACCAGAACACGTGGATGTCA ATATACATCCAACCAAAAAGGAGGTTAGCCTCTTAAATCAAGAGCGTATTATTGAAAAAA TTAAAGATGCCATCGAGGAAAAACTGGTGAACTGTAATAACACAAGGATATTCCAAACTC AGGCACTAAACCCTTCAGCACTTACTCAAGCTAACACACGAAAGGACATGGGTACCGAGG TCAGCACGCCTACTGGAGAAAAATCTCAAAAGATTCCTGTGAGCCAAATTGTCAGAACAG ATCCTCGCGATCCATCTGGAAGGTTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTG AAAAGAAGTCTGACCTTGTTGCCGTAAGAAATATTGTAAGATCAAGAAGGAATCCAAAAG ATGCTGGTGATTTGTCCAGTCGCCATGAGCTTGTTACAGAAATAGATTCTAACTTACATC CTGGCCTTTTCGATATTGTTAAGAATTGCACATATGTTGGAGTTGCGGATGAAGTTTTCG CTTTGATACAACACAATACCCTCTTATACCTTGTCAATGTGGTAAATGTTAGCAAAGAAC TCATGTACCAACAAGCCTTGTGCCGTTTTGGGAACTTCAATGCTATAAAACTCAGTGAAC CAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTGAAAGATGACGAGTCAATGAGTGATG TAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTGAACACTGAGATACTGAAAGAAAATG CTGAGATGATTAATGAGTACTTCTCTATTCACATTGATCAAGGTGGCAACCTGACCAGAC TTCCTGTTGTACTTGATCAGTACACTCCTGATATGGATCGCCTTCCAGAGTTCATGTTGA GTCTAGGAAATGATATTACCTGGGACGTTGAGAAAGAGTGCTTCAGAACGGCAGCAGCTG CTATCGGAAACTTCTATGCGCTTCATCCTCCCATCCTTCCAAATCCATCTGGCAAAGGCA TTCAGTTATACAAGAAAAATAAAGATTGCATGGGAAGTGCTGAACAGGCTGATAACAATT TACCAAGTACAGATGAAGATGACATCGATCAAGAGCTGCTTGCGGAAGCAGAGGCAGCAT GGGCTCAACGTGAGTGGACCATCCAGCACGTCTTGTTCCCGTCGATGCGACTTTTCCTCA AGCCCCCTAAGTCGATGGCAACTGATGGAACGTTTGTCCAGATTGCTTCTCTAGACAAGC TTTACAAGATCTTCGAGAGATGCTAGCCGACAAGCGGCATGTCGAGAAGGAAGGGAAGAG CGCGACGCGACCGACGCCCTTGCCGGTTCCTTCCGGGACGTGTGTATATAATGCGGTGTC ACTGTTTTTTCCCCCCTTTTTCCGATAGGGCTGTAAATATTTTTGAAGGACGAGCAAAGT TTGCTGGGCTCCAGCTCAGCCCTGGAATTGAATGGCAAATGCACGAATGATTTGGCTCTG CTACGCAATGCTGTCATTGTTGTTTCCCTCTAATGACCCCGCTGGCAGATATGTCATGCC CTCTTACAACGATCGCCCAAAAAAAGATTTTACAAAATCAAACGCATGCCTTTTTTTCTT TTCTTTTTCTGATCCGAAG