- Transcript HORVU3Hr1G089130.22
- Transcript IDHORVU3Hr1G089130.22
- Gene IDHORVU3Hr1G089130
Exon Structure of HORVU3Hr1G089130.22
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 627476335 | 627476197 | + |
chr3H | 2 | 627476767 | 627476547 | + |
chr3H | 3 | 627476952 | 627476852 | + |
chr3H | 4 | 627477223 | 627477102 | + |
chr3H | 5 | 627477389 | 627477298 | + |
chr3H | 6 | 627478018 | 627477913 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g67420.1 | +2 | 3e-103 | 317 | 154/219 (70%) | protein|lipase, putative, expressed |
TAIR PP10 | AT1G05790 @ ARAPORT AT1G05790.1 @ TAIR |
+2 | 6e-61 | 203 | 100/212 (47%) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687 |
BRACH PP3 | Bradi2g57770.4.p | +2 | 3e-143 | 418 | 192/217 (88%) | pacid=32774684 transcript=Bradi2g57770.4 locus=Bradi2g57770 ID=Bradi2g57770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (781 bp)
>HORVU3Hr1G089130.22 781 150831_barley_pseudomolecules CTACGATACAATAGATGGCTTTGGTGGGCAAGGTTTGGGATGGTAATTACAGTGCTCCAA TTTGTGCTGGCACTTTATTTGATGTGCATTATTGTAAAGGATTTCTCATCTGGGAAGTCG TTGAAAGAGTGTTTTTCAGGGACACGGCAAGGACAACAATGACTGGAAGAATATCTTGTT AATAATTTTTCTTGTTCTTATGTGGGTGGGAACAATAGTCCAGTGTGCCACAGGTTCCGA TGTATTAAGATGGAGGTCCTTTTATGCAACTCATGATATAGCATGGAGGGCTCACTACAG GGAGGTGTTTGATCATGGCATTCGTGAGGTTTTATGTTGTCTAGGACGGGTGAAGTACTC GAGTGTACTGGAAGATGATGATATATGTGTCGTGGCAAAACTGTTGGGCGATATTATGGC TTATCGTGCATCTGGAACTGGCCATCTTGAGCTCATAGCAGGGTTTTCATTGTTGCAGAA ATCCAAGATGTCGACGGTTGTTTCAAGAGAACAAGCAGAGGCTCCTCATGATCTCATCCA AGAGGCTATTCTGTTTCATCCATTTGCTGAAGCTGCATATACAGGTCCGTTACTTGATTT TGGAAGGAATCCTCTTATGTTTCCCTGTGTTTGGCTCAATAGGCAAGGTATTTTAACTCC ATGGACTCGTGCTAGACGACCAATCCTTGAAGGAGATAATTGGTGGAGAGGGCATGCAGC GGCTTTCCTAAAGTATGTCAATGTGCCCCCAGAAGTTCTTCGGAAAGGGCGTGTTAGCCA G