- Transcript HORVU3Hr1G050240.3
- Transcript IDHORVU3Hr1G050240.3
- Gene IDHORVU3Hr1G050240
Exon Structure of HORVU3Hr1G050240.3
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 358149282 | 358149277 | + |
chr3H | 2 | 358149679 | 358149564 | + |
chr3H | 3 | 358149891 | 358149809 | + |
chr3H | 4 | 358150386 | 358150265 | + |
chr3H | 5 | 358152519 | 358152355 | + |
chr3H | 6 | 358152688 | 358152595 | + |
chr3H | 7 | 358153398 | 358153224 | + |
chr3H | 8 | 358153529 | 358153493 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g39790.1 | +3 | 5e-144 | 405 | 196/254 (77%) | protein|esterase/lipase/thioesterase, putative, expressed |
TAIR PP10 | AT1G29840 @ ARAPORT AT1G29840.1 @ TAIR |
+3 | 5e-102 | 298 | 143/247 (58%) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263 |
BRACH PP3 | Bradi2g41780.1.p | +3 | 1e-162 | 452 | 217/258 (84%) | pacid=32782108 transcript=Bradi2g41780.1 locus=Bradi2g41780 ID=Bradi2g41780.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (798 bp)
>HORVU3Hr1G050240.3 798 150831_barley_pseudomolecules CCTTCCATGCTACACAGAGGGTATTGATAACGAACAAGCGTGGAGAGAAACTTGTGGGGC TACTGCATCCCACGGGTTTGAACAAGATTGTAGTCTTGTGCCATGGCTTTACGGCCTCCA AGAGTTCTGGCATTATTGTTGATCTGGCAGATGCAATAATAAAAAAAGGGATTAGTGTCT TTCACTTTGATTTCAGTGGAAACGGAGAGAGCGAAGGCGAATTCCAGTATGGCAACTACA GGAAAGAGGCTGAAGACTTGCATTCTGTTGTCTCATATCTGTATCAGGAGAAGTATGATG TAGCAGCTGTTGTTGGTCACAGCAAAGGAGGAGATGTGGTTGTTCTTTATGCTTCCCTAT ATGACGATGTCCACATGGTTGTTAACCTATCTGGCCGATTTTATTTGGAGAAAGGCATTG AGGAACGCCTAGGGAAGGAATTTCTTGACAGAATAAATAAGGAAGGTTACATTGATGTCA CAAACAAGTCAGGAAATATGTTATACAGGGTAACAAAAGAGAGCTTGATGGAACGACTCA ACACTGACATGCGTGCAACGAGCCTCTCCATTAGCAAGGAATGCAGCTTCTTCACAGTTC ATGGTTCTGCTGATGACATCATTCCGGTGGAAGATGCATATGAGTTTGCAAAGCATATAC CAACCCACAAACTCTGTGTCGTCGAGGGAGCAGATCACTGCTACACCAGACATCGTAAAG AACTTTCAGATGCTGTAGTGGGTTTCATTACATCCAACAAGGCCAGGGATACCACGCTAG AAGATCAATGAATTCTGA