- Transcript HORVU3Hr1G018200.17
- Transcript IDHORVU3Hr1G018200.17
- Gene IDHORVU3Hr1G018200
Exon Structure of HORVU3Hr1G018200.17
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 47558732 | 47558601 | + |
chr3H | 2 | 47559206 | 47559088 | + |
chr3H | 3 | 47559495 | 47559319 | + |
chr3H | 4 | 47559849 | 47559802 | + |
chr3H | 5 | 47560140 | 47560020 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g41730.1 | +1 | 2e-88 | 258 | 134/183 (73%) | protein|expressed protein |
TAIR PP10 | AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR |
+1 | 9e-37 | 127 | 68/167 (41%) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195 |
BRACH PP3 | Bradi3g33790.1.p | +1 | 3e-103 | 296 | 144/167 (86%) | pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (597 bp)
>HORVU3Hr1G018200.17 597 150831_barley_pseudomolecules ATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGGAGGAGACGGAG CGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTGCCGCCATCATC ACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAAC ATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATG AGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGAT GCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTG GGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCAC CAGGCTGAGTATGCGCTAAAATCATCAATCATCTCTTTGTTGACATGGAAAAGCAGTTCA AGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCAACCAAACATACCGAAAGATGAA GGTAAGAAATGAAACAATAAAACTGAAGATATGGTTTTTAGTGATGGTTTGGTCTGA