- Transcript HORVU3Hr1G018200.14
- Transcript IDHORVU3Hr1G018200.14
- Gene IDHORVU3Hr1G018200
Exon Structure of HORVU3Hr1G018200.14
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 47557628 | 47557560 | + |
chr3H | 2 | 47558735 | 47558463 | + |
chr3H | 3 | 47559832 | 47559088 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g41730.1 | +1 | 2e-47 | 108 | 52/69 (75%) | protein|expressed protein |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi3g33790.1.p | +1 | 3e-52 | 120 | 59/69 (86%) | pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1087 bp)
>HORVU3Hr1G018200.14 1087 150831_barley_pseudomolecules ATTGGAAGCTAGGGTTCATCACTGCACATTGGGGAATTTCGTGTGAAGGACCACTTCTTC ATTCAACATGTTGACCTGAGCCCAGCCTATCATACGTGCCTCGTTCTCAGCAGCTGCAGA CGTTCCCTAAGAAAATAGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAA GGGAAACGAGATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGG GTGAGGAAGGCACGGGAGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCC CAGTTCTCCAATGCTGCCGCCATCATCACCCGCCTTCTGGTAGTACTTGGAGATGCTAAA AATCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATG AGGAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTGTAAGCTGCTGTCACTGTT GTTACAACCGCTTTTGGTTTGGTCCAACTCTAGAAGCATATGCAACGGAATTGTTTCGAG TTGGTGTTACAATGTTGCTGCATTTTTTTTCAGGGAGGAGTTCAGTGGCATTGCCAAAGG TTTGAGCAAGGTACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGG GAAACAATTGCAGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCT ACAAACACTGTCTGAAATGCACCAGGCTGAGTACGAAACAAGTGACATACCTTCGCCAAA CCTACTCTGTTTTTAGAACATCCTCATTTTCTTAATAAATAATACAAAGCTTACTCATTT GACTGTCGCGCTATTGCTGATATGTATATTTGCCACCTCATATATGGGAATCACCTATTT AAACCAGTACCATCTCTCTTGTAGCATTTTGTTTTTGCTGGTGTCATATGTTTAAGATAT TATTTGCTTTCTTTTCTGACAATTCATTGATATGCATCTTACTCTTGTTATCATAGCAGA AGCTACTTCTTTACTGATAATACATTGATATGCCAGGTATGCGCTAAAATCATCAATCAT CTCTTTG