- Transcript HORVU3Hr1G018200.11
- Transcript IDHORVU3Hr1G018200.11
- Gene IDHORVU3Hr1G018200
Exon Structure of HORVU3Hr1G018200.11
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 47557249 | 47557190 | + |
chr3H | 2 | 47559206 | 47559088 | + |
chr3H | 3 | 47559495 | 47559319 | + |
chr3H | 4 | 47559849 | 47559802 | + |
chr3H | 5 | 47560084 | 47560020 | + |
chr3H | 6 | 47560404 | 47560173 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g41730.1 | +1 | 3e-80 | 239 | 122/161 (76%) | protein|expressed protein |
TAIR PP10 | AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR |
+1 | 6e-35 | 123 | 66/171 (39%) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195 |
BRACH PP3 | Bradi3g33790.2.p | +1 | 1e-92 | 271 | 132/161 (82%) | pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (701 bp)
>HORVU3Hr1G018200.11 701 150831_barley_pseudomolecules CACCGGTGGACGGCGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAACGACA GTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGAT CTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTG GAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGATGCTAATCAGATG GTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTGGGAATTTTGCCA ACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCACCAGGCTGAGTAT GCGCTAAAATCATCAATCATCTCTTTGTTGACATGGAAAAGCAGTTCAAGTGAAATCGCT GCAATGCGTCAACTCTTGGTAGACCAACCAAACATACCGAAAGATGAAGTGCAATCTGTC TTCGACATTATATTTGCAGATGAAATTTGCTAAGTTGAGCATGCATCCTACTATTGGAAG CCCTATTGCCAAGACATGTTGAAGCAACTGTATTTTGATCTACTCCTTCCGTTCATAAAT ATAAGCTTTTCTGACCTTTCTGTGAATCGGATATATATAGACACGTTTTAGTGTCTTTGT TCACTCATTTCACTCGTGTATGTAGTCCATATTGAAATATC