- Transcript HORVU2Hr1G084930.16
- Transcript IDHORVU2Hr1G084930.16
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333601 | + |
| chr2H | 2 | 614334867 | 614334784 | + |
| chr2H | 3 | 614335005 | 614334958 | + |
| chr2H | 4 | 614335184 | 614335079 | + |
| chr2H | 5 | 614336189 | 614336085 | + |
| chr2H | 6 | 614337611 | 614337144 | + |
| chr2H | 7 | 614338348 | 614338217 | + |
| chr2H | 8 | 614338544 | 614338458 | + |
| chr2H | 9 | 614338728 | 614338642 | + |
| chr2H | 10 | 614338934 | 614338838 | + |
| chr2H | 11 | 614339597 | 614339480 | + |
| chr2H | 12 | 614348172 | 614348118 | + |
| chr2H | 13 | 614348432 | 614348266 | + |
| chr2H | 14 | 614349221 | 614349034 | + |
| chr2H | 15 | 614350161 | 614350013 | + |
| chr2H | 16 | 614350541 | 614350292 | + |
| chr2H | 17 | 614351269 | 614351011 | + |
| chr2H | 18 | 614351485 | 614351389 | + |
| chr2H | 19 | 614354844 | 614354764 | + |
| chr2H | 20 | 614355033 | 614354977 | + |
| chr2H | 21 | 614355353 | 614355222 | + |
| chr2H | 22 | 614355517 | 614355431 | + |
| chr2H | 23 | 614355844 | 614355736 | + |
| chr2H | 24 | 614356065 | 614355929 | + |
| chr2H | 25 | 614356910 | 614356806 | + |
| chr2H | 26 | 614357971 | 614357683 | + |
| chr2H | 27 | 614358168 | 614358046 | + |
| chr2H | 28 | 614358861 | 614358722 | + |
| chr2H | 29 | 614359570 | 614359050 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +1 | 0.0 | 1345 | 675/846 (80%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+1 | 0.0 | 1028 | 560/1126 (50%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.4.p | +1 | 0.0 | 2024 | 1008/1141 (88%) | pacid=32809297 transcript=Bradi5g14307.4 locus=Bradi5g14307 ID=Bradi5g14307.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4745 bp)
>HORVU2Hr1G084930.16 4745 150831_barley_pseudomolecules GAGACAGTGAGACACTGGGTGGCGGCTAGAGCAGAGCAGGGGAAGGGAACCGAAGCTAGT CGCAAAGGTCTCGCCGCCTCTGCGCTGACTGCATCGAGATAAACAGTCTGGACCCCGGTC ACGACGCGCGCAGCCCCTTCCACTCCATCGCTCCATTCCACGTCAAAACCTCCTCCCCGG ACTCGAGTCAGAGAAACCCAAACGCAGATCCCCTCCTCGTCAGATCATCCCTCCCGCACC CGGAACATCCAATCCGATCAACCCCGTCTCCCCGAGGCACCAAATCGCCGCCGCCGCTGC AGCCACCCCCTCTTGTCCGGCGCTGCCTCCCGCGCGCGCTCCGCTCCGATGGGGCACAGC GCGAGGAGGAAGAAGAAGAAGGGCGGCGCTGGGCGCAAGGCGGCCAAGGACCACGCCGCG CAGCTCGAGGGCGACCAGACCGCGCTCACGGACGAGCTCACGGCGCTGGCTGCAATTTTT CTTGAGGACTTCAAAATAACTTCACAATCACCTAACACCCGATTTAGCATATGTATCAGG TATTGTCTTATCGGCATGGGCTTTGGAGATTTAAATGTTTCGGCTATTCTTGATGTAATT TGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGCGAATCATACCCGAGAAAAACTTG TCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTTCTGACCAGGCAAACATTTATTCC AGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGGCTGCCCAAGAATTCCTTTCAGAA ATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTCACTTAGGTTCAAGTACAGTACAG GAAACAACTGATGCAGATGTGAAAGCTACCCTTGACAGCAGTCCTTACCCTGGAATCTTT TACATCTACAATTCATTCGATTTGTATAGTCAACTATATGATGATAATAGTTGGCAAAGG CAAGGTTTCGATCCTACAACTGATAATGCCAACAAAAATATTGGATCTCAAGTCAATTCA AATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAATCCCGTTTTTCAGCTGATAAGGTC AATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAACAGCAGCATGCCATGAAGCTGGGT GTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTGCAGAGGAAACTGATAATGACAGC AAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAGATACTCCAGAGAGGAGTTTCAGC AGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATGAAGGTTGGAATGATGAAGATTCT GCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATGTTTCAGACATGTTTGATGATGCT TCGCAAAATAAGAAAAGGGATTTAATTCTGGTACACTTGCTTCGGTTAGCCTGTGCGTCA AAAGATTCTCTTTCAGCTGCTTTGCCAGTAATATCATTGGAGTTATGCAACATAGGGGTT CTTTCTGAATGGGCTAAGCAATTAATTTCTGAATCTCCTGCTGTTTTTGGGGAAACTTTC GATCATGTTTTTGGGCAACAAATGATATCTTCGGAGTGCTCTCTATTTTGGAGGGCTGAC AATTCATCGTCTAGGCCAAACTCCCGTTATTTGAATGATTTTGAAGAGCTCCGTTCACTT GGTCAGGGGGGCTTTGGCCGTGTGGCATTGTGTAAAAACAAGCTCGATGGACGCCAATAT GCTGTAAAGAAGATACGCCTCAAGGATAGAAGTCCTCAAGTGAATGAAAAGATTCTCAGA GAAGTTGCCACACTTTCACGACTGCAGCATCAGCATGTTGTTCGTTACTACCAGGCATGG GTTGAAACTGAATATGGTCAACATCATGTTGTGAACAGCGGGGGGTCACGCACTGCTGAG AGCTCTATGTATAGTTTCGACGAGATCAGCTTATCAGATGCAGGTGCTGGAAATAAGCAG GAATGCACGTACTTGTACATCCAAATGGAGTATTGTCCTAGAACCCTGCGACAGGACTTT GAGACATATAGTTCATCTTTCAATGTCGACCATGCATGGCACTTATTTCGACAAATCGTG GAAGGCCTAGCACATGTTCATAGTCAAGGCATCATACACCGGGACTTGACACCTAGCAAC ATATTTTTTGATGTGCGCAACGATATCAAAATTGGAGATTTTGGTCTTGCCAAATTTCTA AAGCTGGAGCAGCTGGATCATGACCAATATATTCCTACTGAAGGAATGGGCGTTTCAATG GATGGAACAGGTCAAGTAGGTACCTATTTTTATACTGCACCGGAGGTAGAACAGAAGTGG CCACAGATAAACGAAAAGGTTGACATGTACAGTGCGGGTGTTATATTCTTTGAGCTTTGG CATCCATTTTCAACAGCAATGGAAAGACATCTTGTTCTCACTGATCTTAAACAGAAAGGC GAGTCTCCAATATCATGGTCAACACAATTTCCTGGTCAATCAAATCTATTAAGACGCTTG CTGTGTCCAAGCCCGTCCGAACGTCCATCTGCGATTGAGCTTTTGCAAAATGACTTGCCT CCTCGGATGGAGGACGAGTGGTTAAATGATGTACTTAGAATGATACAGACACCAGAAGAC ACTTACGTTTATGATCGAGTTATATCTACAATATTTAATGAAGATCGACTGGTCGCCAAA ATGCAATGTCAGCATGAAAGCAGTAAAAAATCCACTTATAAAAATGATAACAGTGAACTC TTGGATTCCATTATTGAGGTTAGCAAAGAGGTTTTTAAGCGACATTGTGCTAAAAGGTTC CAGATAACACCCTTGCATACATTGGATGGGAAATTTACTGAAAATAGTGGAAAGACAGTG AAGATCCTAACGCAAGGAGGAGAGATGCTAGAACTTTGCTATGAGCTGCGAACACCATTT GTTATGAACGTTGCTGCTAACCAGTTATCATCATGTAAGCGTTATGAAATATCATGGGTT CACAGAAGAGCAGTTGGCCATTCAACTCCTTATCGTTTTCTTCAGGGTGATTTTGACATC ATTGGAGGTTCTTCACCAATAACACAGGCCGAAGTTATCAAGGTAGCTTTGGACCTTGTG AGACGTTTTTACAATTCGAAGGCAATAGTTATTCGACTGAATCATAGCAAACTCGCTGAA GCAGTTTGTTCCTGGGCAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTA TCTTCTACTCTTGTTCAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTC ATTCGAGGGCAACTATTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACAT AAAGCAGATCAGCGGTTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACC TTTTTCTATGATAAATCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGT TTGAGGGTATGGTCAGTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGAC TATTACTACTCAGATATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGT TCCCATGAAAAGTTGCTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGG GATAAGACACATAAAACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAA TTCCTACCTAATAATCCTTCATCTGACGTTGGGTTGCCAAGGTTGCACAACTGATCATCT AGCTGTACTGCATTTCACATCCCCCTTTAATGGGTCACTGAGATTTCTTTAGATGCGCTA ATATTTTTTGGACATCAGGATTGAAAATAGCATCAGTGTACTAGTCTGTTCAAAGGGCGG CGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGGAAGCTAACATAAA GGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACGAGTACGCCAGTGA TCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGCAAACTGATCTTGT GAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGGAAGAAATTGTGAA GTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCTGGAGCTGATTGGC AGTCTGCTCCTAAGTGAATTTCAGGTGAAAGCAGTGTTGCCTTGCCAAACATTTTCACCT ACACCAAATTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATCCTGGAGCATTGGC CAAGATTGATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTGCGGTGAATGCAAG CTGACGGGTAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGATAGCTAGTTGGTGC AGAGTTACTTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACGTTCTTGTTGATAG TGGAACGGCTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAAAATTTGCTTCAAA TTCTTCTACAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCATGTACAGGCCAAT TTTCCTTCTTTGATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGCTTGGAGAAG ACAAGCCAATGCAGTTTTGCTACAATACCGGTCAAAGTAGAATGTATGTAATCTGTTATC TGTGC