- Transcript HORVU2Hr1G077560.23
- Transcript IDHORVU2Hr1G077560.23
- Gene IDHORVU2Hr1G077560
Exon Structure of HORVU2Hr1G077560.23
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr2H | 1 | 560839277 | 560838438 | - |
chr2H | 2 | 560840111 | 560839880 | - |
chr2H | 3 | 560841423 | 560840973 | - |
chr2H | 4 | 560841998 | 560841505 | - |
chr2H | 5 | 560842181 | 560842111 | - |
chr2H | 6 | 560842352 | 560842277 | - |
chr2H | 7 | 560844230 | 560844063 | - |
chr2H | 8 | 560844539 | 560844336 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g35470.1 | +2 | 0.0 | 468 | 261/311 (84%) | protein|calmodulin binding protein, putative, expressed |
TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+2 | 2e-169 | 417 | 227/312 (73%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
BRACH PP3 | Bradi3g46060.2.p | +2 | 0.0 | 483 | 267/311 (86%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2536 bp)
>HORVU2Hr1G077560.23 2536 150831_barley_pseudomolecules AAACAAAGCAAAGGCAAAGGCGGGCGCCACCTCCACCCACGCCACACATAGATCTCTCTC TCTCTCCCTCCATCTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCTCC GGCTCGAGCTCGACGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTATC GTTTGCCAGTTACTAGTTGCTAAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCCGC GGAGATGCAGAGGCAGGGGCGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGACCC TGGCGGCAGTGGCGGAGGCGGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTCCC GGCCCTCGCCAGTGTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTC ATCCCTGGAGCCGATTCTCCGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTAGCCAA ATTGGGACCTGCAGCAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATTGA GGGCCCCAATGGTAGTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTCTT TACTGGAGGAAAAGTGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGATGC AAACACTGGACATGTCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTTGT TCTCGAGGGTGATTTTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAGAG CCACATTGTGAAAGAACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTGAC ACTTAAAGAAGGCGTAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGAT AAGGAGCAGAAAATTCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCG TATCAAAGAGGCGAAGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAA GAAACATTACCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGA CGGTGCATTCCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCA ACTTCTTGTTAAAGATCAACAGAAGTTAAGAAGTGTAAGTCGTACTATTTCTCGACTTTT GAGTTGTAAACCTTGCTAGTTCGTAGCAAAACATGAGCTTCTTCTATTGGCCTTTTGCAG ATCCTTGGTACTGGCATGTCAAATAAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACT TGTGTTCTGAGTGGCAAACATTATATATATTACTCGAAGGATACAGCAAGTGTTGGTGCA ATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGATCAGTTTATTTCAACG GAAAATCTTACTGAAAACCAGAGGGTGTTTGCGGATACGTTGGTGAAGCAAGCATACGAT GATTGGATCAATGTTGTAGAATATGATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAG AAATCTGTCACAACAAGAAGTGATGTTGCAAATGTCTCTACAAGCTACACTTCTTATGAT TCAGCGCACTCTCAGAAACAATTGGCACGAGGACATGCCAATATTGAGCGATCTCTCATG AGCAGTACGACTAAAGACGAGACAAGAATTGCATCCAACGGGAATCAAGTAGCAATATAT GAAGCCAATCCTCAGGACATTTCACCAAGTATTACCATGCAATATGGCATGAGTTCATTG ATCCCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAGCATCAAGAAGCTCCAAC ATGCTAGCATTTGGACCTCCACCACAGCAGCCGCATAACTTCGAATTCTCAGCATTTGGT CTGTCCATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGCCTGGACGGTTGCAGGAG AACCGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAGGGAGAAGCCATGACATG CTGGAGAATGAAGAAGAGATGCAACATATGCTGCGCATTCTTAGCGGCGGGGCAGCAGCA AACATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTGTACCGGACTTCAACTTC GTGGATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGTGGCTTAAGATTAAGGCT GCCATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGAGAAGAGCTCAGCTTGTT GAGCTGGATGACTAGGGGATACGGATGTTGGTAAGACACTTGTTTTTCTCGTCTTGTATA ATTGCTTTGTTGACGCAATTATAGTCAGGATCTCAAGCTCCAAAAGTATGAATGGACTCA CGTTGGTTGTATAGGTAGCTGTTTGATGGTCATTATCTAAGTTTTGTTGGTGTTCAGAAA AACAAAACTGCTACAACATTGGCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACAC TTGAAACAGGCTTTTT