- Transcript HORVU2Hr1G060680.16
- Transcript IDHORVU2Hr1G060680.16
- Gene IDHORVU2Hr1G060680
Exon Structure of HORVU2Hr1G060680.16
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr2H | 1 | 405594558 | 405594359 | + |
chr2H | 2 | 405594715 | 405594650 | + |
chr2H | 3 | 405594910 | 405594845 | + |
chr2H | 4 | 405595321 | 405595025 | + |
chr2H | 5 | 405595560 | 405595400 | + |
chr2H | 6 | 405596686 | 405596579 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g05010.1 | +3 | 5e-84 | 259 | 150/239 (63%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g58230.1.p | +3 | 5e-114 | 334 | 187/244 (77%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (898 bp)
>HORVU2Hr1G060680.16 898 150831_barley_pseudomolecules CGGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGGAGGCCAAGCGCTACTGTTCAAGA GGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATACCGACGACTGTGAGG CCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGACTCGTGCTGCCGAGG TCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGC AAGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGTCCATTCTAGACGAAGCAATCG AGTACTTGAAGTCTCTGCAACTGCAAGTTCAGATCATGTGGATGACTACTGGGATGACGC CCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGGCCGTGGGCTTGAACTCAG CGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAAGGGTAGCACCGTTTATGA ACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAGCTATCGATTCCCTCGATG TGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATC CAGACGACACGCTAACAGCGGCATCTCAGCTTCCGGGTATGTTGCCCTATGCATCTCAAA AGGCACAACAAAACCAGAATCATCAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGAC CCTGCCCGCCATCTTTTGCTGACGGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGA TGATTTACTGATTGGCCATCTATCTATATGATAATATAAGATGCCAAGGAAACTCAGACA TGTCCTTCACATCCCTAACGAACGGCCAGAATATCACCTGGCATATATAACTCGCAGG