- Transcript HORVU2Hr1G040410.1
- Transcript IDHORVU2Hr1G040410.1
- Gene IDHORVU2Hr1G040410
Exon Structure of HORVU2Hr1G040410.1
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr2H | 1 | 196197811 | 196197203 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g37610.1 | +1 | 9e-65 | 216 | 134/187 (72%) | protein|B3 DNA binding domain containing protein, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g24720.3.p | +1 | 2e-67 | 222 | 122/181 (67%) | pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (609 bp)
>HORVU2Hr1G040410.1 609 150831_barley_pseudomolecules ATGAGGACTACATATAATGATTGCTTTTGCTTAATTGACATTGCAGGTGCTGCAAAAAAG GCTAAACTGAAGATGGAAACTGACAGTATTGATGTTTCGGATGGGCTGGACACTCTGGCA AACCTTGCTATTCTTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAACTACAAAGCACCCC CGCCATCGCCCTGGCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAGTGGGAAGGGCCCA AAGCACAAGCAGACGTGCACCTGCAATGTATGTATGACGGTGCGCCGTCGTTTTAGGACA CTGATGCTTCGGCGTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGAGCCGCCTCGCAAG AAAGAGCAAGGCCAGTCGAGCGAGTCGATTCCACAAGATGTGCTGCCGGCTAGCACCAGT CCTACTAGCACTCCCCAAAACGTGAACGGAAATGGTGAAGATGCGGAAGAAACCGTGGAG CATAGCATGGTATCCTCTCCTATGAAGAACCAGATTGACCTGAACATTCAGCCTGAACGG GAAGACGAGCAGTCACCAAAATCAGATGCGGTCGGTGCAATGAGACTTCCCCGAGAGAAC GCAGCCTAG