- Transcript HORVU2Hr1G013400.22
- Transcript IDHORVU2Hr1G013400.22
- Gene IDHORVU2Hr1G013400
Exon Structure of HORVU2Hr1G013400.22
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr2H | 1 | 29123857 | 29123762 | + |
chr2H | 2 | 29124505 | 29124063 | + |
chr2H | 3 | 29124781 | 29124617 | + |
chr2H | 4 | 29124992 | 29124859 | + |
chr2H | 5 | 29125344 | 29125189 | + |
chr2H | 6 | 29125969 | 29125780 | + |
chr2H | 7 | 29127230 | 29126067 | + |
chr2H | 8 | 29127760 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g49460.2 | +2 | 6e-172 | 519 | 289/404 (72%) | protein|response regulator receiver domain containing protein, expressed |
TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+2 | 4e-66 | 236 | 179/421 (43%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
BRACH PP3 | Bradi1g16490.7.p | +2 | 0.0 | 525 | 298/407 (73%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2779 bp)
>HORVU2Hr1G013400.22 2779 150831_barley_pseudomolecules CACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGC CTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGCCGCCGGCAGCTCCATTCCAGGAG ACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGT TTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGG ATGCGACCGAGGTTCGACTGTCATTCACGGCCCTATTGCTTGCTGTTGCTGCTGGCTCCT GCCTCCGCGTCAACCACCACCAAACGACCCCAACATGTTTCCTCTTGGAGCCAGGCAGCC TCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGC CCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGA GACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGT TATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACAT CGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGG CAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGA TTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCC GATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTC CAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGG CGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGC AAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTGC CGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGG CACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGG TACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGATGGATTCAAAGG CAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAA CGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAG TGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTC GATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTG CTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGA GCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACA GAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCA GTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTG CAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCT CACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCT CTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGC CCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATC GTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCA AGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCA AACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGT CCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACT CATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTG CTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAAC GGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCG GGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCT GGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGC ACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGG ATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCC TGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAG TAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCA ATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCAT CAGCTTGGCCATGGCGGCA