- Transcript BART1_0-u57237.005
- Transcript IDBART1_0-u57237.005
- Gene IDBART1_0-u57237
Exon Structure of BART1_0-u57237.005
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 653255206 | 653253680 | - |
chr7H | 2 | 653255658 | 653255311 | - |
chr7H | 3 | 653255899 | 653255838 | - |
chr7H | 4 | 653256103 | 653255992 | - |
chr7H | 5 | 653256324 | 653256237 | - |
chr7H | 6 | 653257566 | 653256663 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.759925 | 3.39138 | 3.59291 |
morex | ETI | 8.74481 | 10.4653 | 3.20974 |
morex | LEA | 5.89145 | 10.7728 | 7.14812 |
morex | EPI | 0.690314 | 0.452424 | 0.323269 |
morex | ROO | 8.52926 | 5.23937 | 3.11768 |
morex | ROO2 | 2.72433 | 3.42716 | 3.6619 |
morex | NOD | 19.7265 | 8.62109 | 23.399 |
morex | RAC | 0.0000181231 | 0.313568 | 0.0686401 |
morex | INF1 | 3.84536 | 1.91492 | 1.37601 |
morex | INF2 | 7.77232 | 3.40206 | 5.07152 |
morex | CAR5 | 0.325571 | 0.0979038 | 0.194747 |
morex | CAR15 | 0.0686736 | 0 | 0.0124522 |
morex | LEM | 8.61842 | 7.71927 | 0.891652 |
morex | LOD | 0.251949 | 0.809419 | 1.23221 |
morex | PAL | 0.0495031 | 1.50818 | 1.9062 |
morex | SEN | 25.1494 | 14.1073 | 14.0727 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g51260.1 | +3 | 3e-114 | 361 | 266/459 (58%) | protein|MYB family transcription factor, putative, expressed |
TAIR PP10 | AT5G37260 @ ARAPORT AT5G37260.1 @ TAIR |
+3 | 1e-33 | 131 | 100/235 (43%) | Symbols: RVE2, CIR1 | Homeodomain-like superfamily protein | chr5:14751344-14752972 REVERSE LENGTH=287 |
BRACH PP3 | Bradi1g29680.1.p | +3 | 1e-149 | 452 | 285/452 (63%) | pacid=32806206 transcript=Bradi1g29680.1 locus=Bradi1g29680 ID=Bradi1g29680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3041 bp)
>BART1_0-u57237.005 3041 150831_barley_pseudomolecules CCTTCCTCCTCCTCCTCCGCCTCCGCTTCCTCCTCCTCCGTCTCCCCCGGCAGCACGTGC GCGCCCCGGCGGCCTCCTCTCTTAGCTGCGCCGCTCGCCGGAGCGTCTCTTCTCGTTTGG CTTCTTTTCTTTGGGTCAGTTTCCTTGGGCCACGGTGTCTCGCCGGCCGGCTCCGGTCGC CGAGAGGGAGGGTGTTTTTTCGGTGCTTCCTGGGCGATCCCGGCGAGAGACGCTTCTGTC CCAGCCTCCGCCGCAGGCCGCCCGCTTCTGTCCCCGCCTTTGCCGCCCGCCGTCTGCTTC TGTCCCCGCCTTCGCCGTCCGCCGTCTGCCGTCTGCTTCGTTCGATCTCGGTGACGGGGA CGCCGAGATTCGGACCTCCGCCGGGGAACGGCTCATGGCTTCCATGGCGCTCGCGGAGGT AAAGATCCCTCCTTTTTTTTCTTCTCCGCGCGCGTTCCCTGGCCGTTCCTCGCCTGCTGC AAAATTTTACTTGCGCAGTAAAAAACATTTTTCCTGGGAGGGATTTTACCTTGTATATTT CTGTTCTTGATGGCTTCTCCGTTGGATAATTTGCCAAAATGAGTTTTTTATTTATGTATT TACTTCTGCATCTACCACCAGTAGTCTCTAGTTTTTTTTTTTTCAACATTTTTGGAGGGA TTTTTATCTTGCGAGAAATGGCCTGTTTCTAGACACTTCTGTTTTGGGAGGATACAGACC ACACCACCACAATATCTTTAGAGGCTTCGAGAGCTAGAAATGGGGAGGACACAACTTACA TACATATTTCATACCAAACATGAGAGCTAGAGATGGGGATTATTTTAGTTAGAGCCACCT ACCAAACATGCCAGGAGGCCTGATTGCCAAATCCAGAAACACTTTATGGTGCTTTCCATC CTAGGAAACGGATGCACTGGATTCATCCAGATTGCCGAACGGCAAAGGGTTATCGGTGGA TGTTGCAATGCAACCCAATGAGGAGGGGATGGCCTAGGAAGCCATACACGATCACAAAGC AGCGGGAGAAGTGGACGGACGAAGAGCACGAGAAGTTCCTGGAGGCGCTGAAGCTGTATG GCCGGTCCTGGCGTCAGATACAAGAACACATTGGCACAAAGACCGCTGTCCAAATCCGAA GCCATGCCCAGAAGTTTTTCTCCAAGGTGGTGCGCGAACCCGGAGCTAAAATTGAGATCG AGATCCCTCCCCCTAGGCCAAAGAGGAAGCCGCTGCATCCATATCCTCGCAAGCGTGCGG ACTCCTGCAACGGGGCAAACCCAGCAAATGGACCATCCAAGCTTGCTCAAATTTCATCAT CTTCTGGTTCTGACCAAGAGAATGGTTCTCCCGTGTCAGTGTTGTCTGCAATGCAGTCGG ATGCTTTTGGATCATCGATGTCAAACCCGTCATCTCGCAGTACTTCCCCAGAGTCGTCAG ATGAGGAGAATAATGTTCCTCCAATGGTCAGCAGAGAGGAAGGTCAACAAACAGGGATAA ATCAATCCCACAAGGAGGCTGATCAGGAAAACAAAGATACGGGTACCTCCGAAGAGGATT CTTCTGATGAGGTGCAGGTAACAAGCGTGAAGCTGTTCGGGAAGACGGTCGTCATCCCAG ACCCGAGGAAAAGGTGCTCCCCGGATCCAGGCTCAGGGCATGAAAACGGAGGGCAAACCT CACATTCCTCTAACAAAGGAACATCACAAGCCCCACTGGCTGTAGAGATTCCAACACATA CAAAGGGAGAACAAATCTCACAATCCTCTAACAAGGCAACATCACAAGCCCCATTGGCTG TAGAGGTTCCGACGTATACAAAGGGAGAGCAAATCTCACAATTCTCTAACAAGGCAACTT CACAAGCCCCACTGGCTGTAGAAATTCCAGCATTTGCTGCGCCGCCAAGTGGGTGGGTTC TTCCGTACAATTCGTTCCCTCTACATTTTGGGGAATCGGCGGAAGCCAGAATCACCCCTT TACACATGTGGTGGCCATACTATGGGTTCCCTATCAGCCACCCTGGAGGGCTGAGTGTAG TGCCGCACAACGAAGCTACTGATGAGAGCGAAGCTGCAAAGAGCCCTCTGGTTGAATCAA GCTCGAAGAGCCTTCCTGTTGAATCAAGCTCGGACTCCGATGACAATGCTGAGACAACAG CCAACAAGGAGTGGAAAGTGCTCGAGTCGCTCGGGACGGCACAGGTCCCTCGGTCAGCTT CAAGTTTTCAGCTAAAACCAAGCGAGAACTCGGCTTTTGTGAGAGTGAAGCCGATCATAG GCAGCGGAGAAGAGCCGGCGAGGGGGTTTGTGCCATACAAAAGATGTAGAGTTGAATGAC GAAACCGGGGATCTTCTTCCCCGTGTCTAATTTAACTATGAACCCTAGGAGGAGCCTGTT CCACATATTCCTTTGCTCCGGTGTATTCTTAGGTTTTACTCGCACACAGAGATTGGCGGT GGTCTGGCCCAGGAAATGCACGTTGTTTCCTGCTTGGGCCTTGTAATGAGCAGGGCACAG GTGGTTGTTGTAAGTGCTGTAGGATAAAAGCAGGAGGTTTTGTAGGGATGCCAATTCTCT GTCTGTCTCATGTTGTTGATGTAAAAGCAAAGAATTTTTGTGTCACCATTGTTGATTCTT AATGGAAATCGACTTCTCTGAATGAATGAAGCTGGCATGTTTGGTTGTTGCGGGCTGTTG TGTTGGTAAGAGTCTGAAGATGCTGGTGCCTTTTGTCCCGAGCATGCAGGCAGAGCTTGG CCGTGTTCTTCAGACTGGAGTATGGAAGGAAACATTGTTCATCATTGGTAGCAATTGCAT GCCTTTGAAGGTTTCCAGCCATGGCTGCTAAATTCAATTCCATCAAGTGGGACATTATGA TATTTGTCTGAACATTGCAGTTGCCGAACATTCCAATGTTTGCCGCAACTGTTGGCTAGC AATGTCTGACCATTCAATTCTGTCAAGCAAACAGCAGAGGCTGCTTAGTGACTGGGAATT GTACGGGACATAAATCGTGAGTTACTGGGATAAACATTAAG
Protein Sequence (475 aa)
>BART1_0-u57237.005 475 150831_barley_pseudomolecules MHWIHPDCRTAKGYRWMLQCNPMRRGWPRKPYTITKQREKWTDEEHEKFLEALKLYGRSW RQIQEHIGTKTAVQIRSHAQKFFSKVVREPGAKIEIEIPPPRPKRKPLHPYPRKRADSCN GANPANGPSKLAQISSSSGSDQENGSPVSVLSAMQSDAFGSSMSNPSSRSTSPESSDEEN NVPPMVSREEGQQTGINQSHKEADQENKDTGTSEEDSSDEVQVTSVKLFGKTVVIPDPRK RCSPDPGSGHENGGQTSHSSNKGTSQAPLAVEIPTHTKGEQISQSSNKATSQAPLAVEVP TYTKGEQISQFSNKATSQAPLAVEIPAFAAPPSGWVLPYNSFPLHFGESAEARITPLHMW WPYYGFPISHPGGLSVVPHNEATDESEAAKSPLVESSSKSLPVESSSDSDDNAETTANKE WKVLESLGTAQVPRSASSFQLKPSENSAFVRVKPIIGSGEEPARGFVPYKRCRVE