- Transcript BART1_0-u56048.004
- Transcript IDBART1_0-u56048.004
- Gene IDBART1_0-u56048
Exon Structure of BART1_0-u56048.004
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 620784789 | 620784691 | + |
chr7H | 2 | 620785405 | 620785279 | + |
chr7H | 3 | 620786382 | 620785866 | + |
chr7H | 4 | 620786624 | 620786494 | + |
chr7H | 5 | 620787144 | 620786727 | + |
chr7H | 6 | 620788394 | 620787261 | + |
chr7H | 7 | 620788805 | 620788653 | + |
chr7H | 8 | 620789788 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.289745 | 0.0148615 | 0 |
morex | ETI | 0.363282 | 1.32709 | 1.30667 |
morex | LEA | 0.240298 | 0 | 0.124748 |
morex | EPI | 0.483112 | 0.270404 | 0 |
morex | ROO | 0.622172 | 0 | 0 |
morex | ROO2 | 0 | 0.634364 | 0.294488 |
morex | NOD | 0 | 0.852564 | 0.944864 |
morex | RAC | 0.183268 | 0.755744 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 1.85278 | 0 |
morex | LOD | 0 | 0.525039 | 0.859684 |
morex | PAL | 0.749417 | 0.00000000623315 | 0.76798 |
morex | SEN | 0.636761 | 0.00176898 | 0.129755 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g46240.1 | +2 | 0.0 | 549 | 281/417 (67%) | protein|BTB/POZ domain containing protein, putative, expressed |
TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+1 | 5e-69 | 249 | 143/360 (40%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
BRACH PP3 | Bradi1g32690.2.p | +1 | 0.0 | 853 | 467/625 (75%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3448 bp)
>BART1_0-u56048.004 3448 150831_barley_pseudomolecules NNNNNGCGCCGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCG CGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAA AAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTT TCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGA TATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGC AGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAAT TTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTAT CTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAAC TCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGC TCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACT GCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGA CCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGT TCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAA TGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAG GATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTT AATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGA TGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGG GAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTAC GGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGA TATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGATATCT AGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCA CGCACTGATATCTTGTGCTTGGTAGGTACTAGCTTGCTGGCCACAGATGTTATGCGCAAA AGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATG ATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGT CTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCT ACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTA GCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAGAT GTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACGAGGTCAAAA GTCACTTCCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAA GAGTGGGAGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTATG AGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGC CATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGT CAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTC TGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTA GCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATA TCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAA GTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGT CGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGAC GTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATG CTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCA CTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAA ATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATC GTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGC TTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGG TTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGC GACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGG TTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGC ACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATG GTGGACGCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGG CTGGAGCGGCTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCG CAGCACGGAGGCAGGCAGAGGTGACTGAATGATACGTACGTACATGGGGGACCTGAATGC GCGTCGCCGTGCGCTATGTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCACAGA GAATAATGTGCAATGTAAGTAGTAGCATTATCGTCTGGGTTGCCAGAGCGGAGAGCTGTT TGTTGCTCCTGCCTGCATGGCGCACATGGTCACGCGCAAAGGTGCAGGTATCGGAGGACC GACCGGCCTGCTGACACGCACACGCCGCGCCGATCCATCGCCACGCGCATCACAACGGAC ACTTTATATTTTTTTCCCTTCCTTTTCGCGGATCGTCACAACGGACGCCTGGTCACTTGG CTCTGGTGATCAACGCTAGTTGCCGAAGTCAGTCATCAACGCTCGGCTCAAAGCAAGCAG CTAAGATAGTCCCAACGGAACAACCCGC
Protein Sequence (570 aa)
>BART1_0-u56048.004 570 150831_barley_pseudomolecules MRKSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSSLE SNATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIHIT RSKVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLDVG NLCHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSALDN NDLADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMSDR VDSRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARYDL SAALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRSGM HESFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSSLS EFWFLEGVKEESLVAASSLLESSTSAAAVGFVAFAASLGQWEMVDAGVRSVAHLYPRLRD SGGLERLDDELLNMLRTEYVRYSQHGGRQR