- Transcript BART1_0-u53381.004
- Transcript IDBART1_0-u53381.004
- Gene IDBART1_0-u53381
Exon Structure of BART1_0-u53381.004
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 385320482 | 385319776 | - |
chr7H | 2 | 385320686 | 385320596 | - |
chr7H | 3 | 385321733 | 385320936 | - |
chr7H | 4 | 385322055 | 385321816 | - |
chr7H | 5 | 385322493 | 385322164 | - |
chr7H | 6 | 385323086 | 385322800 | - |
chr7H | 7 | 385324231 | 385323651 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 4.97601 | 11.7344 | 9.3301 |
morex | ETI | 7.47364 | 17.1992 | 16.8774 |
morex | LEA | 7.17193 | 11.8132 | 11.9102 |
morex | EPI | 3.93918 | 4.42469 | 2.78607 |
morex | ROO | 6.81851 | 11.5979 | 3.73413 |
morex | ROO2 | 16.2803 | 25.7894 | 23.1689 |
morex | NOD | 5.02246 | 16.7975 | 4.14065 |
morex | RAC | 16.6891 | 16.3725 | 22.2984 |
morex | INF1 | 29.6403 | 24.9746 | 14.9091 |
morex | INF2 | 46.984 | 32.0938 | 43.7278 |
morex | CAR5 | 35.0351 | 34.8885 | 35.0643 |
morex | CAR15 | 13.6905 | 14.6095 | 15.8035 |
morex | LEM | 31.0308 | 23.2973 | 25.8752 |
morex | LOD | 45.8331 | 42.6933 | 30.9685 |
morex | PAL | 22.4628 | 19.7391 | 15.0003 |
morex | SEN | 4.18789 | 14.5811 | 10.9229 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06140.2 | +2 | 0.0 | 745 | 447/743 (60%) | protein|no apical meristem protein, putative, expressed |
TAIR PP10 | AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR |
+2 | 5e-66 | 235 | 117/215 (54%) | Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648 |
BRACH PP3 | Bradi3g16480.1.p | +2 | 0.0 | 831 | 494/808 (61%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3034 bp)
>BART1_0-u53381.004 3034 150831_barley_pseudomolecules GGGGAGATATATATATAGATAGCTTTGTACGTGTTTTTTTGGGGCTTTGCTTTGCGGTTG CCATCGCTTTCTCTTTGCTTTAATTTCGAGGATCACTCGACAGTGGGCGGCGTGGTCCGG CGGCAGTGGCCGAACCGTAATACGATGGTCATCAACAGGGTAAACTCGGACGAGGGGGTA TATACAGAGCAAATTCCGGACACGGTAAAGGAAGTCACGCGGCACTCGCTTTCTTCTCCC ACACGTCTCCTCCCCGCGTCCTCCCCCTAAAAATCCCCAAATCCGACCAAACCCTAGGCA AAATCCACTCCCCTCCGCTTCCTTCGCTGCTAAGTATATCCCCTGGGCTCCGAATCTCCT ACCGGGTTGGGTCTTGTAGTCGTTGGATGAGAGCTTGGGACAGTGGAGGAGGATGACGGT GATGGAGCTCAAGGCGCTACCGCTCGGTTTCCGGTTCCACCCCACCGACGAGGAGCTCGT CAGGCACTACCTCAAGGGGAAGATCACGGGGCAGATCAAGAACGAGGTCGAGGTGATCCC GGAGATCGACGTCTGCAAGTGCGAGCCGTGGGACCTCCCAGATAAAGCTTTGATCCGCTC GGAGGATCCAGAGTGGTTCTTCTTTGCACCCAAGGACCGCAAATATCCCAATGGAAGCAG GTCAAACAGGGCGACGGAGGCCGGGTACTGGAAGGCTACCGGGAAGGACAGGGTCATCAA GTCCAAGGGCGAGAAGAAAAAGCAGCATATGATTGGCATGAAGAAGACCCTTGTGTTCCA CCGAGGACGTGCTCCAAAAGGGGAGCGCACTGGTTGGATTATGCACGAGTACCGCACCAC CGAGCCAGAGTTTGAGTCTGGCGAGCAGGGTGGCTATGTTCTGTACCGCCTATTTCAAAA GCAAGTGGAGAAAACTGAGCGCTCCATTCCGGAGGAAATGGATAGAAGTGGCTACTCTCC CACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGGAAGCTATCACACTCAT AAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTGAGTTGCCATGTACAAT TGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAAATGGCAATCCCGGGAC AGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCGATGAAAGTCCCAAGGC CGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCACAGACGAAAAATCTCGGTTC TCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATGACCATTTGGACAATCTTCT ACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATGAAACAATTGCTGATCCAGA CGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAGACAATGGGATTATGCAGGG TGATTTGCTATATGATGATCCAAACTGGTTTGGTAATTTTCTGTCAGATGACACAAATCC ACAACCAAGTGGATTATATGAGAATGCACCATTGCTTCCTTATGGCACTAATCCTGATGT ACTTTCCATGGACTCCGGCGACGAGTCCTTGCAAGATTTGTTCAATAGCATGGACGATTC AAGTTGGCAGAATGATGTATGGAGCAACGGATTTGGATTTAATCCCATGCATCAGCAGTT ACAGTCTACTGTGCATCCGAACTATATATTTTCTCAACAGGGCATTGCACGCAGGAGGCT TCGGCTACTAGATTCATTGTCTGATGTCAATGTTGAGAGTAGAGAGAGCATGACCAGAGA TGAACATGAAGATGAAGAATCAGATATTGTAACTTCGAAATATAGGAGTGAATCTGTTGA ATCATCTGCAGATGTAGATGAGTCTGAGTCAACCGGGGTTACTATTATGAGCCGGCGCCG TGCTCTAACTAAAAGTGTGCCTTCCGACCGCGATGATGCTGAATCAACGGGGATTACTAT TATGGGCCGGCGCTCTGCTCCAAGTTCAAATGCGCCTTCCGATGAAGCTGATGCTGAGGC AACAGGGATTAATATTGTGAGCCGACGCACTGCTCCAAGTTCAAGCACAGATAACTCATT TACCACCGAACAGGGGACTGCAGTGCGAAGGTTGCGGCTACAATCGAACCTTGACGCAGG ATCATGTTCCAGTGTTGATGGTTTGTCAAGTTGCATTATAGAACATGGAAGTGAAAACGA AGGGCTGGAAGCTGAGATTGACGAGCATGTGGATACAAACTTCCTTGATGATGTTGGTTT TGCTGGCAACAGTCATGCTGATGAGCATATGTACATGCCTGATCATGAAGCTAATTCTCT TACGAGGCTGCGGAAGACAGCAGAGAAAAGCGACAAGGAGAACAAGCAGGAGTGTGGTCC CCAGTCACATGTGAGAGCACCAAGGAAGAGGGGAGGCTTCGCAGCACGCATGATCTTGCC AGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAGCGTTGGGGTCTACGGATGGGCATAATA GCTCTCTTAAAATGGGATTTAATGTGTCACATTTTCCCCACATCGGCTGTGAGCATTGTA CATACTGTGTCTTACTGCCCGCGTTTAGACGGTTGTAAGACAGAGAAGTGTTTGTTCCCC TTTCGGCGGGGAAGTGTAAGTGAGGTAGCAAATGAGAAGCGGGATGAAGCAAGGAGCAAG TGTTGCTGTAGATGCCTGTGACTTGGTACATGCTAGTTTTCGTTTTTCTGTCACCGCAGG TGTTGGCAACCAGGTTGTAGTCATCCATTATGCGTGTTGTTGTGATGTTGTAAGGTCTGA ACCTAATTAGATCTGTTGCAGATCCTTTTTCCCATTTTGTGGAACTTTGCAGTCGCTTCA TTTTTAGTGATGCAGTTGCTTCATTTTTAGTGATTCATCTCCCAATTTTAAGCGGGGTGA AATACTACCTGAGCTCTCAGCAGTCAGCACCAGCACACATCTGGTAAAAAAGAAAACCGA GGTAAAGTAATTGCCGCCCTGCCGCCGCCGCAGC
Protein Sequence (701 aa)
>BART1_0-u53381.004 701 150831_barley_pseudomolecules MTVMELKALPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPDKAL IRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKGEKKKQHMIGMKKTL VFHRGRAPKGERTGWIMHEYRTTEPEFESGEQGGYVLYRLFQKQVEKTERSIPEEMDRSG YSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLADRNGN PGTDEANDVGMPFHRGVDESPKADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPDDHLD NLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQGDLLYDDPNWFGNFLSDD TNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGFGFNPMH QQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVTSKYRSE SVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNAPSDEAD AEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSCIIEHGS ENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKSDKENKQE CGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA