- Transcript BART1_0-u53381.001
- Transcript IDBART1_0-u53381.001
- Gene IDBART1_0-u53381
Exon Structure of BART1_0-u53381.001
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 385320482 | 385319661 | - |
chr7H | 2 | 385320686 | 385320596 | - |
chr7H | 3 | 385321739 | 385320936 | - |
chr7H | 4 | 385322058 | 385321816 | - |
chr7H | 5 | 385322493 | 385322164 | - |
chr7H | 6 | 385323086 | 385322800 | - |
chr7H | 7 | 385324348 | 385323651 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0.0000320234 | 0 |
morex | ETI | 0.00000055812 | 0.0000000046808 | 0.000248214 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0 | 0 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0.000000000910148 | 0.000000561087 | 0.00000157515 |
morex | NOD | 0 | 0.00000295835 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0.00000000920614 | 0 | 0.00000000176629 |
morex | INF2 | 0 | 0.00000204553 | 0.0134904 |
morex | CAR5 | 0 | 0 | 0.0000000704468 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0.000000000290008 | 0 | 0.000000000144028 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0.000000577608 | 0.0000226244 | 0 |
morex | SEN | 0 | 0.00000000571528 | 0.0659697 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06140.1 | +2 | 0.0 | 745 | 447/744 (60%) | protein|no apical meristem protein, putative, expressed |
TAIR PP10 | AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR |
+2 | 8e-66 | 235 | 117/215 (54%) | Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648 |
BRACH PP3 | Bradi3g16480.1.p | +2 | 0.0 | 830 | 494/809 (61%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3275 bp)
>BART1_0-u53381.001 3275 150831_barley_pseudomolecules CGGGGAGGGGGTTATTAAATATAAACGAAACATTTTTTTTATAACTTAAAAACGTACAAC GGGTTGAATATTGGAAAAGCGAGGGTGTTTTTGCAAAAAAGCCAGGCTTTATTATCAGGG GAGATATATATATAGATAGCTTTGTACGTGTTTTTTTGGGGCTTTGCTTTGCGGTTGCCA TCGCTTTCTCTTTGCTTTAATTTCGAGGATCACTCGACAGTGGGCGGCGTGGTCCGGCGG CAGTGGCCGAACCGTAATACGATGGTCATCAACAGGGTAAACTCGGACGAGGGGGTATAT ACAGAGCAAATTCCGGACACGGTAAAGGAAGTCACGCGGCACTCGCTTTCTTCTCCCACA CGTCTCCTCCCCGCGTCCTCCCCCTAAAAATCCCCAAATCCGACCAAACCCTAGGCAAAA TCCACTCCCCTCCGCTTCCTTCGCTGCTAAGTATATCCCCTGGGCTCCGAATCTCCTACC GGGTTGGGTCTTGTAGTCGTTGGATGAGAGCTTGGGACAGTGGAGGAGGATGACGGTGAT GGAGCTCAAGGCGCTACCGCTCGGTTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCAG GCACTACCTCAAGGGGAAGATCACGGGGCAGATCAAGAACGAGGTCGAGGTGATCCCGGA GATCGACGTCTGCAAGTGCGAGCCGTGGGACCTCCCAGATAAAGCTTTGATCCGCTCGGA GGATCCAGAGTGGTTCTTCTTTGCACCCAAGGACCGCAAATATCCCAATGGAAGCAGGTC AAACAGGGCGACGGAGGCCGGGTACTGGAAGGCTACCGGGAAGGACAGGGTCATCAAGTC CAAGGGCGAGAAGAAAAAGCAGCATATGATTGGCATGAAGAAGACCCTTGTGTTCCACCG AGGACGTGCTCCAAAAGGGGAGCGCACTGGTTGGATTATGCACGAGTACCGCACCACCGA GCCAGAGTTTGAGTCTGGCGAGCAGGGTGGCTATGTTCTGTACCGCCTATTTCAAAAGCA AGTGGAGAAAACTGAGCGCTCCATTCCGGAGGAAATGGATAGAAGTGGCTACTCTCCCAC TCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGGAAGCTATCACACTCATAAA TAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTGAGTTGCCATGTACAATTGA AACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAAATGGCAATCCCGGGACAGA TGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCGATGAAAGTCCCAAGCAGGC CGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCACAGACGAAAAATCTCGGTTC TCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATGACCATTTGGACAATCTTCT ACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATGAAACAATTGCTGATCCAGA CGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAGACAATGGGATTATGCAGGC TCAGGGTGATTTGCTATATGATGATCCAAACTGGTTTGGTAATTTTCTGTCAGATGACAC AAATCCACAACCAAGTGGATTATATGAGAATGCACCATTGCTTCCTTATGGCACTAATCC TGATGTACTTTCCATGGACTCCGGCGACGAGTCCTTGCAAGATTTGTTCAATAGCATGGA CGATTCAAGTTGGCAGAATGATGTATGGAGCAACGGATTTGGATTTAATCCCATGCATCA GCAGTTACAGTCTACTGTGCATCCGAACTATATATTTTCTCAACAGGGCATTGCACGCAG GAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAATGTTGAGAGTAGAGAGAGCATGAC CAGAGATGAACATGAAGATGAAGAATCAGATATTGTAACTTCGAAATATAGGAGTGAATC TGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTCAACCGGGGTTACTATTATGAGCCG GCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGCGATGATGCTGAATCAACGGGGAT TACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAATGCGCCTTCCGATGAAGCTGATGC TGAGGCAACAGGGATTAATATTGTGAGCCGACGCACTGCTCCAAGTTCAAGCACAGATAA CTCATTTACCACCGAACAGGGGACTGCAGTGCGAAGGTTGCGGCTACAATCGAACCTTGA CGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAGTTGCATTATAGAACATGGAAGTGA AAACGAAGGGCTGGAAGCTGAGATTGACGAGCATGTGGATACAAACTTCCTTGATGATGT TGGTTTTGCTGGCAACAGTCATGCTGATGAGCATATGTACATGCCTGATCATGAAGCTAA TTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAAGCGACAAGGAGAACAAGCAGGAGTG TGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGAGGGGAGGCTTCGCAGCACGCATGAT CTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAGCGTTGGGGTCTACGGATGGGC ATAATAGCTCTCTTAAAATGGGATTTAATGTGTCACATTTTCCCCACATCGGCTGTGAGC ATTGTACATACTGTGTCTTACTGCCCGCGTTTAGACGGTTGTAAGACAGAGAAGTGTTTG TTCCCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGCAAATGAGAAGCGGGATGAAGCAAGG AGCAAGTGTTGCTGTAGATGCCTGTGACTTGGTACATGCTAGTTTTCGTTTTTCTGTCAC CGCAGGTGTTGGCAACCAGGTTGTAGTCATCCATTATGCGTGTTGTTGTGATGTTGTAAG GTCTGAACCTAATTAGATCTGTTGCAGATCCTTTTTCCCATTTTGTGGAACTTTGCAGTC GCTTCATTTTTAGTGATGCAGTTGCTTCATTTTTAGTGATTCATCTCCCAATTTTAAGCG GGGTGAAATACTACCTGAGCTCTCAGCAGTCAGCACCAGCACACATCTGGTAAAAAAGAA AACCGAGGTAAAGTAATTGCCGCCCTGCCGCCGCCGCAGCGAGAAAAAGAAGAGATGTGG ACTTTTTCAGACTTTAATCTGAAACTATAGCATAAACTAAACTTTGTATGAAACTATTTC ACGATGTGACCCTTTTAAAAATGTTAGAACCTGTG
Protein Sequence (704 aa)
>BART1_0-u53381.001 704 150831_barley_pseudomolecules MTVMELKALPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPDKAL IRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKGEKKKQHMIGMKKTL VFHRGRAPKGERTGWIMHEYRTTEPEFESGEQGGYVLYRLFQKQVEKTERSIPEEMDRSG YSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLADRNGN PGTDEANDVGMPFHRGVDESPKQADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPDDHL DNLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQAQGDLLYDDPNWFGNFL SDDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGFGFN PMHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVTSKY RSESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNAPSD EADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSCIIE HGSENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKSDKEN KQECGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA