- Transcript BART1_0-u52907.017
- Transcript IDBART1_0-u52907.017
- Gene IDBART1_0-u52907
Exon Structure of BART1_0-u52907.017
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 305303888 | 305303247 | - |
chr7H | 2 | 305304132 | 305303990 | - |
chr7H | 3 | 305304585 | 305304317 | - |
chr7H | 4 | 305305059 | 305304860 | - |
chr7H | 5 | 305306721 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 2.75165 | 2.91212 | 1.5468 |
morex | ETI | 28.5092 | 25.0857 | 16.6433 |
morex | LEA | 5.98601 | 1.57554 | 2.9559 |
morex | EPI | 62.9764 | 32.0617 | 67.9592 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0 | 1.22371 | 0.149284 |
morex | NOD | 6.00732 | 9.84128 | 9.32206 |
morex | RAC | 9.57154 | 10.7481 | 9.66474 |
morex | INF1 | 4.83781 | 6.40653 | 8.72889 |
morex | INF2 | 6.08691 | 12.5954 | 8.76111 |
morex | CAR5 | 3.87012 | 4.6465 | 3.21316 |
morex | CAR15 | 0.374957 | 0.573353 | 0 |
morex | LEM | 9.97646 | 9.3972 | 9.44415 |
morex | LOD | 2.63205 | 2.89063 | 4.36346 |
morex | PAL | 4.94867 | 14.1057 | 8.95429 |
morex | SEN | 33.6506 | 26.1687 | 23.9567 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g29370.1 | +3 | 6e-135 | 397 | 194/228 (85%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+3 | 7e-119 | 356 | 167/228 (73%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
BRACH PP3 | Bradi3g34940.1.p | +3 | 8e-140 | 409 | 201/228 (88%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1493 bp)
>BART1_0-u52907.017 1493 150831_barley_pseudomolecules ACCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCGAAACCA CCACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCGGAACCG TACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTT CGCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGA ATGTGAGGCAGGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTG CTGAATCAAAAAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAG AGCTTCAACGAATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGC TTCTCAATTATGTTGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAG AAGATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTC TTAAAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAG ATTGTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCG TAGATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTG TTGTTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCA AGAGTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTG AAACACTTGAGGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTG GAACGATGGCAATGGCTAGAGAAGTAAGGCTCACCTAGACTCTTTAGTTTTAACATATCA AGGATATGCCAAAATAATTATTACATCCTCCAGAAATATAAAGTGCACATGCTTCCCCAA ATTTATCGTTGATCACGAATTTGTTCAGCAATATGTGATACAAAGTTGATACTCCCTCTG TCCCATAATATAAGATGTTAATACAACCATATTGGTTCATTTATAGTTGGATTATTCTTC GGAGGTTAAACTTCAATAACGGGTACGTCTTATGTTTCTGGATGGAGGGAGTAACATTTT CTTAGTTGTAACCAAGGTTTTTTCTTCTTCTTCTTCTCGATAATGTTTTTTTGGATGGGC TAGAAGAATTGGTTTCTGGAAAATATCAGTATTCAGACAAAATTTGAAATCATTTTGTTT TGGGACAAAATATAAGTTTGCAGCCTGACCTACATATAGCTGCGCGTGTCCAAGCAGTTA GTACAATTCATCTGTTCCTCAAAGTAAGTCTCGGGTTCGAGTTTTCTCTGCTGCACAACC GCGAAGAGCCCACATGTGGAGAGAGAGGGAGAGAGAGATGGGAGGGAGAGAGA
Protein Sequence (150 aa)
>BART1_0-u52907.017 150 150831_barley_pseudomolecules MVDGFPYEVPEEYNNMPLLKGRATVDMTVKIKDNPNVEDCVFRIVLDGYNAPVTSGNFVD LVERKFYDGMEIQRADGFVVQTGDPEGPADGFIDPSTGKSRTIPLEIMVDGDKAPIYGET LEELGLYKAQTKLPFNAFGTMAMAREVRLT