- Transcript BART1_0-u52907.013
- Transcript IDBART1_0-u52907.013
- Gene IDBART1_0-u52907
Exon Structure of BART1_0-u52907.013
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 305302829 | 305302285 | - |
chr7H | 2 | 305304132 | 305303817 | - |
chr7H | 3 | 305304585 | 305304317 | - |
chr7H | 4 | 305305059 | 305304860 | - |
chr7H | 5 | 305306720 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0 | 0.770631 | 0 |
morex | LEA | 0 | 0 | 0.42294 |
morex | EPI | 4.00664 | 1.33646 | 2.38643 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0 | 0 | 0 |
morex | NOD | 0 | 0 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0.426696 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0.254907 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0.272373 | 0 |
morex | SEN | 0 | 0.854355 | 0.50821 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g29370.2 | +2 | 6e-151 | 352 | 172/204 (84%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+2 | 1e-135 | 313 | 146/204 (72%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
BRACH PP3 | Bradi3g34940.1.p | +2 | 3e-155 | 363 | 178/204 (87%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1568 bp)
>BART1_0-u52907.013 1568 150831_barley_pseudomolecules CCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCGAAACCAC CACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCGGAACCGT ACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTTC GCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGAA TGTGAGGCAGGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGC TGAATCAAAAAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGA GCTTCAACGAATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCT TCTCAATTATGTTGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGA AGATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCT TAAAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGA TTGTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGT AGATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGT TGTTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAA GAGTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGA AACACTTGAGGTATGCAACCAGCAGTTTTTTTATTTTTATTTCATGGCTGCTGGGAATTC TGGCTGCTTCGGATTGAATGTTCTTACAGTTTGTATGGCCATGCATTTCAGGAACTTGGC CTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGAACGATGGCAATGGCTAGA GAAGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCTGGCTCTTGAAAGAAAGTGAG TTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATTCGGTGTTTGGATACGTAACC GAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACGTTATTGAATCAATCCAGGTT GTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGATTGTAGGGTAGCATGTTTCC GTATATAAGAATTCCTTGACATGCAATTATTTTACGGTATTAAAACCGATGTCTTGTGCT GGAATTTCTAACCTTGTACCATTGTTTTGTTTTCCTTTTTGTGCTTACATATACTCCCTC CGATCCTAAATATAAGTCTTTTTAGAGATTTCACTAAAGGATTACATATGATGCAAAATG AGTGAATCTACACTTTAAATTATGTCTACATACATCCGTATGTAGTTTTCTAGTGGAACC TTTAAAAAGACATGTATTTAGAAACGGAGGGAGTAGTTTTGCATTATGTGGAATTCGATA GATAATGG
Protein Sequence (194 aa)
>BART1_0-u52907.013 194 150831_barley_pseudomolecules MVDGFPYEVPEEYNNMPLLKGRATVDMTVKIKDNPNVEDCVFRIVLDGYNAPVTSGNFVD LVERKFYDGMEIQRADGFVVQTGDPEGPADGFIDPSTGKSRTIPLEIMVDGDKAPIYGET LEVCNQQFFYFYFMAAGNSGCFGLNVLTVCMAMHFRNLAFTRLKQSFLLMHLERWQWLEK NLMTTPLLVKSSGS