- Transcript BART1_0-u44239.020
- Transcript IDBART1_0-u44239.020
- Gene IDBART1_0-u44239
Exon Structure of BART1_0-u44239.020
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 180782519 | 180781911 | - |
chr6H | 2 | 180782974 | 180782908 | - |
chr6H | 3 | 180783208 | 180783085 | - |
chr6H | 4 | 180783571 | 180783362 | - |
chr6H | 5 | 180783770 | 180783666 | - |
chr6H | 6 | 180786158 | 180785988 | - |
chr6H | 7 | 180786706 | 180786233 | - |
chr6H | 8 | 180787333 | 180786860 | - |
chr6H | 9 | 180787544 | 180787451 | - |
chr6H | 10 | 180787695 | 180787634 | - |
chr6H | 11 | 180787865 | 180787778 | - |
chr6H | 12 | 180789166 | 180789050 | - |
chr6H | 13 | 180789433 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 7.20452 | 2.77494 | 0.0747072 |
morex | ETI | 19.1794 | 16.2185 | 17.1983 |
morex | LEA | 10.5706 | 5.50891 | 6.9413 |
morex | EPI | 4.58559 | 9.92066 | 8.22714 |
morex | ROO | 11.7723 | 4.4229 | 2.13156 |
morex | ROO2 | 21.0393 | 22.5817 | 19.8674 |
morex | NOD | 17.7348 | 37.4258 | 12.8408 |
morex | RAC | 29.9232 | 33.1196 | 33.1934 |
morex | INF1 | 12.6139 | 12.7667 | 16.9263 |
morex | INF2 | 23.0983 | 19.5945 | 19.1111 |
morex | CAR5 | 16.0968 | 8.36171 | 12.0917 |
morex | CAR15 | 7.89462 | 9.68739 | 4.43711 |
morex | LEM | 26.5594 | 22.3006 | 16.1077 |
morex | LOD | 32.6449 | 34.0419 | 41.873 |
morex | PAL | 22.2296 | 22.4839 | 32.3744 |
morex | SEN | 7.21199 | 12.4764 | 11.3993 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g11820.2 | +1 | 0.0 | 639 | 469/713 (66%) | protein|GTPase-activating protein, putative, expressed |
TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+1 | 1e-50 | 188 | 176/515 (34%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
BRACH PP3 | Bradi3g07910.1.p | +1 | 0.0 | 808 | 535/684 (78%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2741 bp)
>BART1_0-u44239.020 2741 150831_barley_pseudomolecules CGCAGCCCCAGCGAAGCAGCTCAGCGGCGACAACAAAAGAGGGGACCCTTTCCGTTGGTC GCCACCGCCAACTCGCCTCGGCCCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTT GCTCCCCCCCGAGGAGGGCTCTCCCGCAGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGA AGGAGGACGAGAAGAACGAGCGGGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGA GGTGCATCAACTGCAACAATTTGCCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATG GCTAAATTTACTGCACAAGAAGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGA GAAATATTTTTCAAGGAATGGGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACG GACAAATTGAGGAATTTCATCAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGA AGCTCTGATAGACCACCGAGGGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGA TCTGATGGAAATCGGGGTGGTTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGT CGGAGTTATAGTGGACGGAGTGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGT CCTGGCTATGACCAGAATGATTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGAT AGATCTGGGAAAACAACTCCAGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGA AAGCCAGAGACTGGGTCTCCAAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTT GTACGGCCAGTGAGGGAGATATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCT CCAAAGCCGAATGTAGCCAGACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATT GAACCTCCACCTCAGGCACAGAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGG ATTTCGGAACAGACGAAGGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCC GAACCTACTGCATCTGCCCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTT AATGCACAGCCTATTAACACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCT CCATCAGTGAGCGGCGGTGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACA CCACAATCAGGCAGCACTGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCT GAAACACCCTCTGCCTCCAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAAT GGAGGACAGTCATCCATGATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGA ATCTCAGGCAATCAGGCCTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCT GCTGTGGCTGCCCCTATGGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACA AGTGGTATTCAAGAAGCAACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTT CCAGTGGATTTCTTTACTTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAG AGAGCTCCCCAGTCTGGAATGGGATTTGGCATGCAGTATCCTGCCGGAATGTTGCAGGGA ATGCAGTCATATCCTCAGGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAG CAACCTATGTATCAGCAACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAG CAAAATGCATATCCCCAACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCA GCTCCAATTCAAGCTCACATGCAGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCT GCTAACCCAACATTAGTTGGTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAG ATGTATCAGCCACCTGTACATCAAAACCATTACATGATGCAGCATGTTTCAAACAACATG CCTGAGCAGCTACCTAATGGCATGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGC GTCGGATATGATCAACAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATAT GGTGCTGTCGGTGGAAATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATG TTACCTGTTTATGGTATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCA GTGAGACCAGAATGCACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTG TTCTGTCACTGTAGCTCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAG CTTCAGGAGCAGTAGTTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTG TTCTGTATGCGTTGCCTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTG ATTGGGATCTTTCGAGCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAG TCATGCTGGGTATTCAATTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTG TGGTTAATCAGTTGTTTTGGTCTCACGCTATTGCATTACGG
Protein Sequence (650 aa)
>BART1_0-u44239.020 650 150831_barley_pseudomolecules MAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVERRYTGE RSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRHSYGER SPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREANGSSPP VVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQRTATASSIGSSE GISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVLEQGRS APSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTSVDQQA NGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLLPSNSQG TSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQYPAGMLQ GMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNPFDLGNE AAPIQAHMQSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQHVSNN MPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG