- Transcript BART1_0-u44239.015
- Transcript IDBART1_0-u44239.015
- Gene IDBART1_0-u44239
Exon Structure of BART1_0-u44239.015
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 180782519 | 180781903 | - |
chr6H | 2 | 180782974 | 180782908 | - |
chr6H | 3 | 180783208 | 180783085 | - |
chr6H | 4 | 180783571 | 180783362 | - |
chr6H | 5 | 180783770 | 180783666 | - |
chr6H | 6 | 180786158 | 180785988 | - |
chr6H | 7 | 180786706 | 180786233 | - |
chr6H | 8 | 180787333 | 180786857 | - |
chr6H | 9 | 180787544 | 180787451 | - |
chr6H | 10 | 180787695 | 180787634 | - |
chr6H | 11 | 180787865 | 180787778 | - |
chr6H | 12 | 180788070 | 180788009 | - |
chr6H | 13 | 180789166 | 180789050 | - |
chr6H | 14 | 180789351 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 4.71451 | 14.1718 | 11.3474 |
morex | ETI | 8.04651 | 10.9113 | 7.749 |
morex | LEA | 9.10466 | 4.79948 | 8.26697 |
morex | EPI | 0.997241 | 0.54951 | 0.000000114395 |
morex | ROO | 8.85423 | 0.00501577 | 0.00000114868 |
morex | ROO2 | 3.77709 | 7.33508 | 0.735741 |
morex | NOD | 0.0183469 | 9.40164 | 4.38679 |
morex | RAC | 20.4144 | 8.0714 | 2.17975 |
morex | INF1 | 1.73512 | 5.8752 | 8.34009 |
morex | INF2 | 0.000154444 | 0.844763 | 0 |
morex | CAR5 | 0 | 0.00000132198 | 0.0000000586836 |
morex | CAR15 | 0.00000000106527 | 0.431056 | 0 |
morex | LEM | 11.3037 | 4.49383 | 0.986947 |
morex | LOD | 5.45208 | 13.6297 | 17.3307 |
morex | PAL | 0.897879 | 0.00154401 | 2.29878 |
morex | SEN | 3.70256 | 2.4723 | 9.09048 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g11820.2 | +2 | 0.0 | 757 | 517/752 (69%) | protein|GTPase-activating protein, putative, expressed |
TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+2 | 3e-88 | 293 | 221/554 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 927 | 586/723 (81%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2732 bp)
>BART1_0-u44239.015 2732 150831_barley_pseudomolecules CCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTTGCTCCCCCCCGAGGAGGGCTCT CCCGCAGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACGAGAAGAACGAGCG GGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCAACTGCAACAATTT GGGACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGC ACACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAATTTACTGCACAAGA AGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATATTTTTCAAGGAATG GGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAAATTGAGGAATTTCAT CAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTGATAGACCACCGAG GGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATGGAAATCGGGGTGG TTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTTATAGTGGACGGAG TGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCTATGACCAGAATGA TTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTGGGAAAACAACTCC AGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAGAGACTGGGTCTCC AAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGCCAGTGAGGGAGAT ATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGCCGAATGTAGCCAG ACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTCCACCTCAGGCACA GGTTAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGGAACAGACGAA GGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTACTGCATCTGC CCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCACAGCCTATTAA CACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAGTGAGCGGCGG TGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAATCAGGCAGCAC TGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACACCCTCTGCCTC CAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGACAGTCATCCAT GATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAGGCAATCAGGC CTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTAT GGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGC AACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTAC TTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGG AATGGGATTTGGCATGCAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCA GGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCA ACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCA ACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCA CATGCAGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGT TGGTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGT ACATCAAAACCATTACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAA TGGCATGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACA AGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAA TCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGTAT CTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCAC AAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGCTC CGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTT CGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCT CCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGC GGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAA TTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTT TGGTCTCACGCTATTGCATTACGGATCATTTG
Protein Sequence (716 aa)
>BART1_0-u44239.015 716 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQVRTATAS SIGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHV LEQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFST SVDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLL PSNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQY PAGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNP FDLGNEAAPIQAHMQSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMM QHVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG