- Transcript BART1_0-u44239.014
- Transcript IDBART1_0-u44239.014
- Gene IDBART1_0-u44239
Exon Structure of BART1_0-u44239.014
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 180782519 | 180781901 | - |
chr6H | 2 | 180782974 | 180782908 | - |
chr6H | 3 | 180783208 | 180783085 | - |
chr6H | 4 | 180783565 | 180783362 | - |
chr6H | 5 | 180783770 | 180783666 | - |
chr6H | 6 | 180786158 | 180785988 | - |
chr6H | 7 | 180786706 | 180786233 | - |
chr6H | 8 | 180787333 | 180786860 | - |
chr6H | 9 | 180787544 | 180787451 | - |
chr6H | 10 | 180787695 | 180787634 | - |
chr6H | 11 | 180787865 | 180787778 | - |
chr6H | 12 | 180788070 | 180788009 | - |
chr6H | 13 | 180789166 | 180789050 | - |
chr6H | 14 | 180789424 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.0000419701 | 11.172 | 15.2507 |
morex | ETI | 4.87831 | 6.00516 | 18.2071 |
morex | LEA | 3.15694 | 3.27688 | 1.91758 |
morex | EPI | 0.214124 | 6.59058 | 0.140355 |
morex | ROO | 0.000000102747 | 13.1777 | 2.47757 |
morex | ROO2 | 12.7979 | 4.11416 | 12.1492 |
morex | NOD | 11.7988 | 4.22207 | 9.65652 |
morex | RAC | 4.28406 | 19.8438 | 22.3504 |
morex | INF1 | 14.7599 | 17.67 | 0.0372105 |
morex | INF2 | 11.8169 | 19.6811 | 7.25871 |
morex | CAR5 | 10.6188 | 17.9694 | 12.3354 |
morex | CAR15 | 3.38944 | 6.36494 | 6.85447 |
morex | LEM | 11.5841 | 7.99273 | 12.4575 |
morex | LOD | 20.5024 | 17.7832 | 18.4973 |
morex | PAL | 25.4149 | 22.2666 | 17.6087 |
morex | SEN | 2.62495 | 5.36994 | 1.29389 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g11820.2 | +3 | 0.0 | 768 | 517/749 (69%) | protein|GTPase-activating protein, putative, expressed |
TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+3 | 3e-89 | 296 | 223/566 (39%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
BRACH PP3 | Bradi3g07910.1.p | +3 | 0.0 | 929 | 583/720 (81%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2798 bp)
>BART1_0-u44239.014 2798 150831_barley_pseudomolecules AGCGAAGCAGCTCAGCGGCGACAACAAAAGAGGGGACCCTTTCCGTTGGTCGCCACCGCC AACTCGCCTCGGCCCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTTGCTCCCCCC CGAGGAGGGCTCTCCCGCAGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGACG AGAAGAACGAGCGGGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCATCA ACTGCAACAATTTGGGACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTACCA ATTGCAGTGGAGCACACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAAAT TTACTGCACAAGAAGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAATAT TTTTCAAGGAATGGGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAAAT TGAGGAATTTCATCAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTCTG ATAGACCACCGAGGGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGATG GAAATCGGGGTGGTTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAGTT ATAGTGGACGGAGTGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGGCT ATGACCAGAATGATTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATCTG GGAAAACAACTCCAGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCCAG AGACTGGGTCTCCAAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACGGC CAGTGAGGGAGATATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAAGC CGAATGTAGCCAGACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACCTC CACCTCAGGCACAGAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGATTTCGG AACAGACGAAGGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGAACCTA CTGCATCTGCCCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAATGCAC AGCCTATTAACACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCCATCAG TGAGCGGCGGTGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACCACAAT CAGGCAGCACTGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGAAACAC CCTCTGCCTCCAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGGAGGAC AGTCATCCATGATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAATCTCAG GCAATCAGGCCTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGCTGTGG CTGCCCCTATGGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAGTGGTA TTCAAGAAGCAACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCCAGTGG ATTTCTTTACTTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTC CCCAGTCTGGAATGGGATTTGGCATGCAGTATCCTGCCGGAATGGGAATGCAGTCATATC CTCAGGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCAACCTATGTATC AGCAACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATC CCCAACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAG CTCACATGCAGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACAT TAGTTGGTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCAC CTGTACATCAAAACCATTACATGATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTAC CTAATGGCATGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATC AACAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTG GAAATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACCTGTTTATG GTATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAAT GCACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTA GCTCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGT AGTTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTT GCCTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTC GAGCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTAT TCAATTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTT GTTTTGGTCTCACGCTATTGCATTACGGATCATTTGGT
Protein Sequence (713 aa)
>BART1_0-u44239.014 713 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQRTATASS IGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHVL EQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFSTS VDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLLP SNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQYP AGMGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNPFDL GNEAAPIQAHMQSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQHV SNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG