- Transcript BART1_0-u44239.012
- Transcript IDBART1_0-u44239.012
- Gene IDBART1_0-u44239
Exon Structure of BART1_0-u44239.012
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 180782519 | 180781900 | - |
chr6H | 2 | 180782974 | 180782908 | - |
chr6H | 3 | 180783205 | 180783085 | - |
chr6H | 4 | 180783571 | 180783362 | - |
chr6H | 5 | 180783770 | 180783666 | - |
chr6H | 6 | 180786158 | 180785988 | - |
chr6H | 7 | 180786706 | 180786233 | - |
chr6H | 8 | 180787333 | 180786857 | - |
chr6H | 9 | 180787544 | 180787451 | - |
chr6H | 10 | 180787695 | 180787634 | - |
chr6H | 11 | 180787865 | 180787778 | - |
chr6H | 12 | 180788070 | 180788009 | - |
chr6H | 13 | 180789163 | 180789050 | - |
chr6H | 14 | 180789429 | 180789288 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 7.56084 | 24.0369 | 18.035 |
morex | ETI | 4.32655 | 8.02309 | 11.2951 |
morex | LEA | 14.4079 | 6.9081 | 9.4785 |
morex | EPI | 1.31139 | 3.69724 | 1.49436 |
morex | ROO | 5.51039 | 13.9682 | 4.89055 |
morex | ROO2 | 9.69145 | 10.836 | 13.2486 |
morex | NOD | 21.2045 | 6.01472 | 12.4441 |
morex | RAC | 10.0132 | 18.221 | 22.8279 |
morex | INF1 | 25.4357 | 19.804 | 26.2686 |
morex | INF2 | 28.3566 | 32.8142 | 35.8757 |
morex | CAR5 | 30.8769 | 38.6768 | 34.5555 |
morex | CAR15 | 8.13017 | 8.12277 | 8.72905 |
morex | LEM | 9.33361 | 13.0973 | 15.3748 |
morex | LOD | 24.6734 | 16.4316 | 13.8725 |
morex | PAL | 21.9887 | 19.811 | 16.0082 |
morex | SEN | 3.49083 | 7.97228 | 2.23963 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g11820.2 | +2 | 0.0 | 754 | 507/752 (67%) | protein|GTPase-activating protein, putative, expressed |
TAIR PP10 | AT4G13350 @ ARAPORT AT4G13350.2 @ TAIR |
+2 | 2e-88 | 294 | 221/554 (40%) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602 |
BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 934 | 597/722 (83%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2807 bp)
>BART1_0-u44239.012 2807 150831_barley_pseudomolecules GCCCCAGCGAAGCAGCTCAGCGGCGACAACAAAAGAGGGGACCCTTTCCGTTGGTCGCCA CCGCCAACTCGCCTCGGCCCCCGCTCCTCCGCACGCCCGCGCGGGATCTCGCGCTTGCTC CCCCCCGAGGAGGGCTCTCCCGGGTTTGCGGCGGGCGATGGCGAGCCGGGTGAAGGAGGA CGAGAAGAACGAGCGGGTAATACGCGGGCTGCTCAAGCTGCCCGCAAACAAGAGGTGCAT CAACTGCAACAATTTGGGACCACAATATGTATGCACAAATTTCTGGACCTTCGTTTGTAC CAATTGCAGTGGAGCACACCGAGAGTTCACGCACCGGGTGAAATCTGTTTCCATGGCTAA ATTTACTGCACAAGAAGTCACTGCTCTACAAGGAGGAGGAAATGAGCGTGCTAGAGAAAT ATTTTTCAAGGAATGGGATTCTCAGCGCAATCCATACCCTGACAGCAGTAATACGGACAA ATTGAGGAATTTCATCAAATATGTTTACGTGGAACGGCGATATACAGGAGAAAGAAGCTC TGATAGACCACCGAGGGGAAAGGACGATAAGGATGAACATAGCGAAAATAGAAGATCTGA TGGAAATCGGGGTGGTTCAAGAAGTCCACCATATAATGAAAGTTACTCTGACCGTCGGAG TTATAGTGGACGGAGTGATGACAGAAATTCCAGACATTCCTATGGAGAACGTAGTCCTGG CTATGACCAGAATGATTATAAGAAAAGCCCCCGCCACTTTGAAGTTGTCGACGATAGATC TGGGAAAACAACTCCAGTTCAAAGGTTCGAGGACCGCAGGTTTTCTGAACCACGAAAGCC AGAGACTGGGTCTCCAAATTACCAGAGAGAAGCCAATGGATCTAGTCCTCCTGTTGTACG GCCAGTGAGGGAGATATTGGGTGATGATGCTCCTCAACTTCGGATTGGTGAACCTCCAAA GCCGAATGTAGCCAGACCGATTGACCCTCCAAAACCAAATGGAGCCAGGACCATTGAACC TCCACCTCAGGCACAGGTTAGGACAGCTACTGCCAGCAGCATTGGTTCTTCCGAGGGGAT TTCGGAACAGACGAAGGCAGTAACTCCAGTCAGTTTAATTGATTTTGGTGCAGATCCCGA ACCTACTGCATCTGCCCTGCCATCACAGACAGCCCCTACACCCCAGCAGCAGTCAGTTAA TGCACAGCCTATTAACACAACAGCGCCACAACATGTTCTTGAACAAGGCAGAAGTGCTCC ATCAGTGAGCGGCGGTGATTGGGCATCTTTTGATGCTTTTGGCCAGCAACAACAAACACC ACAATCAGGCAGCACTGTAAATCCGCTTGAGTCTGTGCTTGCACAACTATCATTCTCTGA AACACCCTCTGCCTCCAGTACATCAGCCTTTTCAACTTCTGTTGATCAGCAAGCAAATGG AGGACAGTCATCCATGATAGATCCATCACATTCTTCATTATTTGGTCCACCCGTTGGAAT CTCAGGCAATCAGGCCTCAACAGGAATGCCCGTCCAAGGATCTGCAGTTCATCAATCTGC TGTGGCTGCCCCTATGGGTGGTCTTCCATCTCTATTGCCTTCAAATTCTCAAGGAACAAG TGGTATTCAAGAAGCAACGTCTTCTCATGACAGCAAATCCAGTGGGCGGACAGCACTTCC AGTGGATTTCTTTACTTCACTTTATCCATCAGCAACTCCAGCAATGCCTGGCTGGCAGAG AGCTCCCCAGTCTGGAATGGGATTTGGCATGCAGTATCCTGCCGGAATGTTGCAGGGAAT GCAGTCATATCCTCAGGCAGCATTTTCTCAACCTACATATCAACAGCCTACATATCAGCA ACCTATGTATCAGCAACCTACATACCAACAACCTACGTATCAACAGCCTGTATATCAGCA AAATGCATATCCCCAACCTGCGAAAGCTTCAAACCCTTTTGACCTCGGAAATGAGGCAGC TCCAATTCAAGCTCACATGTCCCTATCTGGACCACTGGGAGCATCAGCAGGCGCTGCTAA CCCAACATTAGTTGGTAACTCTAGTTTTGGAGTTCCACCTCAGCAGCCTCAGCAGATGTA TCAGCCACCTGTACATCAAAACCATTACATGATGCAGCATGTTTCAAACAACATGCCTGA GCAGCTACCTAATGGCATGCTTCCAAGGCAACAAGGAGGGGCTGGTTCCCTCGGCGTCGG ATATGATCAACAAGCTGCCCCTAGGTACTCCCAGCCAAGCACCCCACCTTCATATGGTGC TGTCGGTGGAAATCCTTTTGGGTAAAAAAGGCTTATCAAATGTGGACGTACCATGTTACC TGTTTATGGTATCTTATGTATCTTCAGACCACTGGTGTGTAGTGCCCACTGCCCAGTGAG ACCAGAATGCACAAAGCCCTGGAGAAAAATTTGTTTCATATTTACTGGTCATGTGTTCTG TCACTGTAGCTCCGTGTAACTTGGTCTGGGAGGTGGAAGCGACGTGGTGCATAAGCTTCA GGAGCAGTAGTTCGGTGCTTCTAGCCCCTATTTTCTTGTATATTTGTGTTTGGTGTTCTG TATGCGTTGCCTCCGATGTATATTCACAGAGACCCTATGCCTTGTATGGTTTTTGATTGG GATCTTTCGAGCGGCCCTATCTGATAGTGTACTTAGCTCAGAATGTTACTTTTAGTCATG CTGGGTATTCAATTTTAATGTTTATTGCAATGTCGGACTGAAGGTTGTATAACTGTGGTT AATCAGTTGTTTTGGTCTCACGCTATTGCATTACGGATCATTTGGTG
Protein Sequence (715 aa)
>BART1_0-u44239.012 715 150831_barley_pseudomolecules MASRVKEDEKNERVIRGLLKLPANKRCINCNNLGPQYVCTNFWTFVCTNCSGAHREFTHR VKSVSMAKFTAQEVTALQGGGNERAREIFFKEWDSQRNPYPDSSNTDKLRNFIKYVYVER RYTGERSSDRPPRGKDDKDEHSENRRSDGNRGGSRSPPYNESYSDRRSYSGRSDDRNSRH SYGERSPGYDQNDYKKSPRHFEVVDDRSGKTTPVQRFEDRRFSEPRKPETGSPNYQREAN GSSPPVVRPVREILGDDAPQLRIGEPPKPNVARPIDPPKPNGARTIEPPPQAQVRTATAS SIGSSEGISEQTKAVTPVSLIDFGADPEPTASALPSQTAPTPQQQSVNAQPINTTAPQHV LEQGRSAPSVSGGDWASFDAFGQQQQTPQSGSTVNPLESVLAQLSFSETPSASSTSAFST SVDQQANGGQSSMIDPSHSSLFGPPVGISGNQASTGMPVQGSAVHQSAVAAPMGGLPSLL PSNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLYPSATPAMPGWQRAPQSGMGFGMQY PAGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTYQQPTYQQPVYQQNAYPQPAKASNP FDLGNEAAPIQAHMSLSGPLGASAGAANPTLVGNSSFGVPPQQPQQMYQPPVHQNHYMMQ HVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPRYSQPSTPPSYGAVGGNPFG