- Transcript BART1_0-u44239.010
- Transcript IDBART1_0-u44239.010
- Gene IDBART1_0-u44239
Barley RTD
Exon Structure of BART1_0-u44239.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr6H | 1 | 180782519 | 180781864 | - |
| chr6H | 2 | 180782974 | 180782908 | - |
| chr6H | 3 | 180783205 | 180783085 | - |
| chr6H | 4 | 180783571 | 180783362 | - |
| chr6H | 5 | 180783770 | 180783666 | - |
| chr6H | 6 | 180786172 | 180785988 | - |
| chr6H | 7 | 180786706 | 180786233 | - |
| chr6H | 8 | 180787333 | 180786860 | - |
| chr6H | 9 | 180787544 | 180787451 | - |
| chr6H | 10 | 180787699 | 180787634 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.11112 | 0 | 0 |
| morex | ETI | 0 | 0.000000065418 | 0.580148 |
| morex | LEA | 0 | 0 | 0.864771 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.20256 | 0.0262161 | 0 |
| morex | ROO2 | 0 | 0 | 0.613214 |
| morex | NOD | 0 | 0.00238844 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 5.48604 | 0 |
| morex | INF2 | 0 | 0.00000001553 | 0.00000134941 |
| morex | CAR5 | 0 | 0 | 1.61893 |
| morex | CAR15 | 0.899865 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.000000611148 | 0.0000000173913 | 0.597842 |
| morex | PAL | 0.0000723041 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.0000000893141 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g11820.2 | +2 | 1e-158 | 352 | 282/403 (70%) | protein|GTPase-activating protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g07910.1.p | +2 | 0.0 | 460 | 315/372 (85%) | pacid=32814567 transcript=Bradi3g07910.1 locus=Bradi3g07910 ID=Bradi3g07910.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2452 bp)
>BART1_0-u44239.010 2452 150831_barley_pseudomolecules GTAGCGTGCTAGAGAAATATTTTTCAAGGAATGGGATTCTCAGCGCAATCCATACCCTGA CAGCAGTAATACGGACAAATTGAGGAATTTCATCAAATATGTTTACGTGGAACGGCGATA TACAGGAGAAAGAAGCTCTGATAGACCACCGAGGGGAAAGGACGATAAGGATGAACATAG CGAAAATAGAAGATCTGATGGAAATCGGGGTGGTTCAAGAAGTCCACCATATAATGAAAG TTACTCTGACCGTCGGAGTTATAGTGGACGGAGTGATGACAGAAATTCCAGACATTCCTA TGGAGAACGTAGTCCTGGCTATGACCAGAATGATTATAAGAAAAGCCCCCGCCACTTTGA AGTTGTCGACGATAGATCTGGGAAAACAACTCCAGTTCAAAGGTTCGAGGACCGCAGGTT TTCTGAACCACGAAAGCCAGAGACTGGGTCTCCAAATTACCAGAGAGAAGCCAATGGATC TAGTCCTCCTGTTGTACGGCCAGTGAGGGAGATATTGGGTGATGATGCTCCTCAACTTCG GATTGGTGAACCTCCAAAGCCGAATGTAGCCAGACCGATTGACCCTCCAAAACCAAATGG AGCCAGGACCATTGAACCTCCACCTCAGGCACAGAGGACAGCTACTGCCAGCAGCATTGG TTCTTCCGAGGGGATTTCGGAACAGACGAAGGCAGTAACTCCAGTCAGTTTAATTGATTT TGGTGCAGATCCCGAACCTACTGCATCTGCCCTGCCATCACAGACAGCCCCTACACCCCA GCAGCAGTCAGTTAATGCACAGCCTATTAACACAACAGCGCCACAACATGTTCTTGAACA AGGCAGAAGTGCTCCATCAGTGAGCGGCGGTGATTGGGCATCTTTTGATGCTTTTGGCCA GCAACAACAAACACCACAATCAGGCAGCACTGTAAATCCGCTTGAGTCTGTGCTTGCACA ACTATCATTCTCTGAAACACCCTCTGCCTCCAGTACATCAGCCTTTTCAACTTCTGTTGA TCAGCAAGCAAATGGAGGACAGTCATCCATGATAGATCCATCACATTCTTCATTATTTGG TCCACCCGTTGGAATCTCAGGCAATCAGAAACTGTGTTATAGGCCTCAACAGGAATGCCC GTCCAAGGATCTGCAGTTCATCAATCTGCTGTGGCTGCCCCTATGGGTGGTCTTCCATCT CTATTGCCTTCAAATTCTCAAGGAACAAGTGGTATTCAAGAAGCAACGTCTTCTCATGAC AGCAAATCCAGTGGGCGGACAGCACTTCCAGTGGATTTCTTTACTTCACTTTATCCATCA GCAACTCCAGCAATGCCTGGCTGGCAGAGAGCTCCCCAGTCTGGAATGGGATTTGGCATG CAGTATCCTGCCGGAATGTTGCAGGGAATGCAGTCATATCCTCAGGCAGCATTTTCTCAA CCTACATATCAACAGCCTACATATCAGCAACCTATGTATCAGCAACCTACATACCAACAA CCTACGTATCAACAGCCTGTATATCAGCAAAATGCATATCCCCAACCTGCGAAAGCTTCA AACCCTTTTGACCTCGGAAATGAGGCAGCTCCAATTCAAGCTCACATGTCCCTATCTGGA CCACTGGGAGCATCAGCAGGCGCTGCTAACCCAACATTAGTTGGTAACTCTAGTTTTGGA GTTCCACCTCAGCAGCCTCAGCAGATGTATCAGCCACCTGTACATCAAAACCATTACATG ATGCAGCATGTTTCAAACAACATGCCTGAGCAGCTACCTAATGGCATGCTTCCAAGGCAA CAAGGAGGGGCTGGTTCCCTCGGCGTCGGATATGATCAACAAGCTGCCCCTAGGTACTCC CAGCCAAGCACCCCACCTTCATATGGTGCTGTCGGTGGAAATCCTTTTGGGTAAAAAAGG CTTATCAAATGTGGACGTACCATGTTACCTGTTTATGGTATCTTATGTATCTTCAGACCA CTGGTGTGTAGTGCCCACTGCCCAGTGAGACCAGAATGCACAAAGCCCTGGAGAAAAATT TGTTTCATATTTACTGGTCATGTGTTCTGTCACTGTAGCTCCGTGTAACTTGGTCTGGGA GGTGGAAGCGACGTGGTGCATAAGCTTCAGGAGCAGTAGTTCGGTGCTTCTAGCCCCTAT TTTCTTGTATATTTGTGTTTGGTGTTCTGTATGCGTTGCCTCCGATGTATATTCACAGAG ACCCTATGCCTTGTATGGTTTTTGATTGGGATCTTTCGAGCGGCCCTATCTGATAGTGTA CTTAGCTCAGAATGTTACTTTTAGTCATGCTGGGTATTCAATTTTAATGTTTATTGCAAT GTCGGACTGAAGGTTGTATAACTGTGGTTAATCAGTTGTTTTGGTCTCACGCTATTGCAT TACGGATCATTTGGTGGTACGTGTTACCATCTGTTTTTCCTTTCTTCCTGGC
Protein Sequence (259 aa)
>BART1_0-u44239.010 259 150831_barley_pseudomolecules MPVQGSAVHQSAVAAPMGGLPSLLPSNSQGTSGIQEATSSHDSKSSGRTALPVDFFTSLY PSATPAMPGWQRAPQSGMGFGMQYPAGMLQGMQSYPQAAFSQPTYQQPTYQQPMYQQPTY QQPTYQQPVYQQNAYPQPAKASNPFDLGNEAAPIQAHMSLSGPLGASAGAANPTLVGNSS FGVPPQQPQQMYQPPVHQNHYMMQHVSNNMPEQLPNGMLPRQQGGAGSLGVGYDQQAAPR YSQPSTPPSYGAVGGNPFG